1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...attgacatactgttccagcagtaaagaaataattgaatctgagtattgtgtttggaatgatatttctgcttaaccactttttttcttttgtttcctgcagTTTTTACGACAGGTCGTCTCCTATTTACACACAGGCTCGATTCCTTCCTCCATCAAAAATGTTGGACGCTGATGTGACTGACAGTGTTATTGGAGAAGGT
species | Physcomitrella patens |
transcript | PP1S76_105V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTCTACAATGCCAATCTGGGCATCACTAAGAAACCTGTTCCTGATTTCAG TTTTTACGACAGGTCGTCTCCTATTTACACACAGGCTCGATTCCTTCCTCCEST: gi|162247364|gb|FC421433.1|FC421433
genomic: TTCTACAATGCCAATCTGGGCATCACTAAGAAACCTGTTCCTGATTTCAGgtgagttatc ... tttcctgcagTTTTTACGACAGGTCGTCTCCTATTTACACACAGGCTCGATTCCTTCCTCC
EST: TTCTACAATGCCAATCTGGGCATCACTAAGAAACCTGTTCCTGATTTCAG TTTTTACGACAGGTCGTCTCCTATTTACACACAGGCTCGATTCCTTCCTCCEST: gi|162166090|gb|FC343372.1|FC343372
genomic: TTCTACAATGCCAATCTGGGCATCACTAAGAAACCTGTTCCTGATTTCAGgtgagttatc ... tttcctgcagTTTTTACGACAGGTCGTCTCCTATTTACACACAGGCTCGATTCCTTCCTCC
EST: TTCTACAATGCCAATCTGGGCATCACTAAGAAACCTGTTCCTGATTTCAG TTTTTACGACAGGTCGTCTCCTATTTACACACAGGCTCGATTCCTTCCTCCEST: gi|18334116|gb|BJ166132.1|BJ166132
genomic: TTCTACAATGCCAATCTGGGCATCACTAAGAAACCTGTTCCTGATTTCAGgtgagttatc ... tttcctgcagTTTTTACGACAGGTCGTCTCCTATTTACACACAGGCTCGATTCCTTCCTCC
EST: TTCTACAATGCCAATCTGGGCATCACTAAGAAACCTGTTCCTGATTTCAG TTTTTACGACAGGTCGTCTCCTATTTACACACAGGCTCGATTCCTTCCTCC
genomic: TTCTACAATGCCAATCTGGGCATCACTAAGAAACCTGTTCCTGATTTCAGgtgagttatc ... tttcctgcagTTTTTACGACAGGTCGTCTCCTATTTACACACAGGCTCGATTCCTTCCTCC
ttgtgtttggaatgatatttctgcttaaccactttttttcttttgtttcctgcagTTTTTACGACAGGTCGTCTCCTATTTACACACAGGCTCGATTCCTTCCTCCATCAAAAATGTTGGACGCTGATGTGACTGACAGTGTTATTGGAGAAGGT
gcttaac putative branch site (score: 25)
tttctgcttaaccact CT-rich tract
tttttttcttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgacatactgttccagcagtaaagaaataattgaatctgagtattgtgtttggaatgatatttctgcttaaccactttttttcttttgtttcctgcagTTTTTACGACAGGTCGTCTCCTATTTACACACAGGCTCGATTCCTTCCTCCATCAAAAATGTTGGACGCTGATGTGACTGACAGTGTTATTGGAGAAGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA