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gtaagctttcgtatcattcatacctcaagtgtatttacgctcttttatcttcatcctcacggcacttttctgatattgcaatcatcccaacttcgataaaaacttctgggttgagctgaatgtgtcactgctatttcctcaacagGAGGATGGACAAGAGTCATAGTGGAAAAACCTTTTGGTAAGGATTTAGAGTCGTCAGAAGCTTTGAGCTCTGAGCTAGGAGCTCTCTTTACAGAAGAGCA
species | Physcomitrella patens |
transcript | PP1S73_244V6.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGTCTATCCGGAGGTGAGCGAAAAGGTCCGGAAACACTGCATGAATCCAA GAGGATGGACAAGAGTCATAGTGGAAAAACCTTTTGGTAAGGATTTAGAGTEST: gi|100441249|gb|BY962538.1|BY962538
genomic: CGTCTATCCGGAGGTGAGCGAAAAGGTCCGGAAACACTGCATGAATCCAAgtaagctttc ... tcctcaacagGAGGATGGACAAGAGTCATAGTGGAAAAACCTTTTGGTAAGGATTTAGAGT
EST: CGTCTATCCGGAGGTGAGCGAAAAGGTCCGGAAACACTGCATGAATCCAA GAGGATGGACAAGAGTCATAGTGGAAAAACCTTTTGGTAAGGATTTAGAGTEST: gi|100389158|gb|BY952362.1|BY952362
genomic: CGTCTATCCGGAGGTGAGCGAAAAGGTCCGGAAACACTGCATGAATCCAAgtaagctttc ... tcctcaacagGAGGATGGACAAGAGTCATAGTGGAAAAACCTTTTGGTAAGGATTTAGAGT
EST: CGTCTATCCGGAGGTGAGCGAAAAGGTCCGGAAACACTGCATGAATCCAA GAGGATGGACAAGAGTCATAGTGGAAAAACCTTTTGGTAAGGATTTAGAGTEST: gi|100445006|gb|BY982833.1|BY982833
genomic: CGTCTATCCGGAGGTGAGCGAAAAGGTCCGGAAACACTGCATGAATCCAAgtaagctttc ... tcctcaacagGAGGATGGACAAGAGTCATAGTGGAAAAACCTTTTGGTAAGGATTTAGAGT
EST: CGTCTATCCGGAGGTGAGCGAAAAGGTCCGGAGACACTGCATGAATCCAA GAGGATGGACAAGAGTCATAGTGGAAAAACCTTTTGGTAAGGATTTAGAGTEST: gi|208398370|gb|DC912327.1|DC912327
genomic: CGTCTATCCGGAGGTGAGCGAAAAGGTCCGGAAACACTGCATGAATCCAAgtaagctttc ... tcctcaacagGAGGATGGACAAGAGTCATAGTGGAAAAACCTTTTGGTAAGGATTTAGAGT
EST: CGTCTATCCGGAGGTGAGCGAAAAGGTCCGGAAACACTGCATGAATCCAA GAGGATGGACAAGAGTCATAGTGGAAAAACCTTTTGGTAAGGATTTAGAGT
genomic: CGTCTATCCGGAGGTGAGCGAAAAGGTCCGGAAACACTGCATGAATCCAAgtaagctttc ... tcctcaacagGAGGATGGACAAGAGTCATAGTGGAAAAACCTTTTGGTAAGGATTTAGAGT
cttcgataaaaacttctgggttgagctgaatgtgtcactgctatttcctcaacagGAGGATGGACAAGAGTCATAGTGGAAAAACCTTTTGGTAAGGATTTAGAGTCGTCAGAAGCTTTGAGCTCTGAGCTAGGAGCTCTCTTTACAGAAGAGCA
ctatttcctc CT-rich tract
ataaaaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctttcgtatcattcatacctcaagtgtatttacgctcttttatcttcatcctcacggcacttttctgatattgcaatcatcccaacttcgataaaaacttctgggttgagctgaatgtgtcactgctatttcctcaacagGAGGATGGACAAGAGTCATAGTGGAAAAACCTTTTGGTAAGGATTTAGAGTCGTCAGAAGCTTTGAGCTCTGAGCTAGGAGCTCTCTTTACAGAAGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA