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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gacagttatgtttcttgtaagttggacttcctcctgggcgataaatttgaatttgtacatgatagttacttacaaatcacggctcttattttaaatgcagGTTCAGAAGCCGTTGCAGAAACATGGCGGGAGGCTCGAGCACAACGAAACCTACTGTGGCTCTTGCTTTGGCGCGGAATCT

Basic information

species Physcomitrella patens
transcript PP1S72_188V6.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208354058|gb|DC930156.1|DC930156
EST:     ATGGTAAAGTTGTAAATGCCCCAAAACCAGATGCTATCAACGCTCCCAAG                         GTTCAGAAGCCGTTGCAGAAACATGGCGGGAGGCTCGAGCACAACGAAACC
genomic: ATGGTAAAGTTGTAAATGCCCCAAAACCAGATGCTATCAACGCTCCCAAGgtaagttatt ... ttaaatgcagGTTCAGAAGCCGTTGCAGAAACATGGCGGGAGGCTCGAGCACAACGAAACC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgaatttgtacatgatagttacttacaaatcacggctcttattttaaatgcagGTTCAGAAGCCGTTGCAGAAACATGGCGGGAGGCTCGAGCACAACGAAACCTACTGTGGCTCTTGCTTTGGCGCGGAATCT
                     tacttac  putative branch site (score: 1)
                                     ctcttatttt  putative PPT
                                      tcttattttaaat  TA-rich tract