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...ttggatttttaaaccttgaatttccaaatttatgtaaatcaatgtgtattgatttacaaaatcatcaaaagaatgttctgattgttgtgttccttctcagGGCCTCCTACAAAGGATTTGCAGATTGTATTCGATTGCTACTTTTTATGGACGCCTGTTTGGATCGAGTGGATAAAGAAG
species | Physcomitrella patens |
transcript | PP1S70_186V6.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGTGCTGAAGTGGACCCCCCTGACCATGATGGACGCAGCCCACTGCATTG GGCCTCCTACAAAGGATTTGCAGATTGTATTCGATTGCTACTTTTTATGGAEST: gi|162203902|gb|FC380194.1|FC380194
genomic: GGTGCTGAAGTGGACCCCCCTGACCATGATGGACGCAGCCCACTGCATTGgtaggccagg ... tccttctcagGGCCTCCTACAAAGGATTTGCAGATTGTATTCGATTGCTACTTTTTATGGA
EST: GGTGCTGAAGTGGACCCCCCTGACCATGATGGACGCAGCCCACTGCATTG GGCCTCCTACAAAGGATTTGCAGATTGTATTCGATTGCTACTTTTTATGGAEST: gi|100363514|gb|BY966427.1|BY966427
genomic: GGTGCTGAAGTGGACCCCCCTGACCATGATGGACGCAGCCCACTGCATTGgtaggccagg ... tccttctcagGGCCTCCTACAAAGGATTTGCAGATTGTATTCGATTGCTACTTTTTATGGA
EST: GGTGCTGAAGTGGACCCCCCTGACCATGATGGACGCAGCCCACTGCATTG GGCCTCCTACAAAGGATTTGCAGATTGTATTCGATTGCTACTTTTTATGGAEST: gi|162161000|gb|FC337011.1|FC337011
genomic: GGTGCTGAAGTGGACCCCCCTGACCATGATGGACGCAGCCCACTGCATTGgtaggccagg ... tccttctcagGGCCTCCTACAAAGGATTTGCAGATTGTATTCGATTGCTACTTTTTATGGA
EST: GGTGCTGAAGTGGACCCCCCTGACCATGATGGACGCAGCCCACTGCATTG GGCCTCCTACAAAGGATTTGCAGATTGTATTCGATTGCTACTTTTTATGGAEST: gi|162162808|gb|FC337862.1|FC337862
genomic: GGTGCTGAAGTGGACCCCCCTGACCATGATGGACGCAGCCCACTGCATTGgtaggccagg ... tccttctcagGGCCTCCTACAAAGGATTTGCAGATTGTATTCGATTGCTACTTTTTATGGA
EST: GGTGCTGAAGTGGACCCCCCTGACCATGATGGACGCAGCCCACTGCATTG GGCCTCCTACAAAGGATTTGCAGATTGTATTCGATTGCTACTTTTTATGGA
genomic: GGTGCTGAAGTGGACCCCCCTGACCATGATGGACGCAGCCCACTGCATTGgtaggccagg ... tccttctcagGGCCTCCTACAAAGGATTTGCAGATTGTATTCGATTGCTACTTTTTATGGA
gtattgatttacaaaatcatcaaaagaatgttctgattgttgtgttccttctcagGGCCTCCTACAAAGGATTTGCAGATTGTATTCGATTGCTACTTTTTATGGACGCCTGTTTGGATCGAGTGGATAAAGAAG
ttctgat putative branch site (score: 3)
ttgtgttccttctc putative PPT
atttacaaaatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggatttttaaaccttgaatttccaaatttatgtaaatcaatgtgtattgatttacaaaatcatcaaaagaatgttctgattgttgtgttccttctcagGGCCTCCTACAAAGGATTTGCAGATTGTATTCGATTGCTACTTTTTATGGACGCCTGTTTGGATCGAGTGGATAAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG