1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaactgattctggaaaagtaacgtaaaatgtttttttggaatgactgtctttgtagaaggcatgaaatctaatgttcctggtgtcgaatgttttgtgcagCTTCATATGTATCACGCATATTAGGCAATCAGGTGAAAGAAGTGCTCCACGATTTATCTGTGGAAGCTGTGAAGAAGCAGCAGAGTAGACAGATCTCAGC
species | Physcomitrella patens |
transcript | PP1S6_413V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGTGGTTACACAGGAAGTTTTGCCTTCAACGCTCCCACCTGGCCCATTAT CTTCATATGTATCACGCATATTAGGCAATCAGGTGAAAGAAGTGCTCCACGEST: gi|162250674|gb|FC428265.1|FC428265
genomic: GGTGGTTACACAGGAAGTTTTGCCTTCAACGCTCCCACCTGGCCCATTATgtattgttca ... ttttgtgcagCTTCATATGTATCACGCATATTAGGCAATCAGGTGAAAGAAGTGCTCCACG
EST: GGTGGTTACACAGGAAGTTTTGCCTTCAACGCTCCCACCTGGCCCATTAT CTTCATATGTATCACGCATATTAGGCAATCAGGTGAAAGAAGTGCTCCACGEST: gi|208398710|gb|DC916233.1|DC916233
genomic: GGTGGTTACACAGGAAGTTTTGCCTTCAACGCTCCCACCTGGCCCATTATgtattgttca ... ttttgtgcagCTTCATATGTATCACGCATATTAGGCAATCAGGTGAAAGAAGTGCTCCACG
EST: GGTGGTTACACAGGAAGTTTTGCCTTCAACGCTCCCACCTGGCCCATTAT CTTCATATGTATCACGCATATTAGGCAATCAGGTGAAAGAAGTGCTCCACGEST: gi|162223140|gb|FC398770.1|FC398770
genomic: GGTGGTTACACAGGAAGTTTTGCCTTCAACGCTCCCACCTGGCCCATTATgtattgttca ... ttttgtgcagCTTCATATGTATCACGCATATTAGGCAATCAGGTGAAAGAAGTGCTCCACG
EST: GGTGGTTACACAGGAAGTTTTGCCTTCAACGCTCCCACCTGGCCCATTAT CTTCATATGTATCACGCATATTAGGCAATCAGGTGAAAGAAGTGCTCCACGEST: gi|22131654|gb|BQ826728.1|BQ826728
genomic: GGTGGTTACACAGGAAGTTTTGCCTTCAACGCTCCCACCTGGCCCATTATgtattgttca ... ttttgtgcagCTTCATATGTATCACGCATATTAGGCAATCAGGTGAAAGAAGTGCTCCACG
EST: TACACAGGAAGTTTTGCCTTCAACGCTCCCACCTGGCCCATTAT CTTCATATGTATCACGCATATTAGGCAATCAGGTGAAAGAAGTGCTCCACG
genomic: TACACAGGAAGTTTTGCCTTCAACGCTCCCACCTGGCCCATTATgtattgttca ... ttttgtgcagCTTCATATGTATCACGCATATTAGGCAATCAGGTGAAAGAAGTGCTCCACG
tgtctttgtagaaggcatgaaatctaatgttcctggtgtcgaatgttttgtgcagCTTCATATGTATCACGCATATTAGGCAATCAGGTGAAAGAAGTGCTCCACGATTTATCTGTGGAAGCTGTGAAGAAGCAGCAGAGTAGACAGATCTCAGC
atctaat putative branch site (score: 3)
aaatctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaactgattctggaaaagtaacgtaaaatgtttttttggaatgactgtctttgtagaaggcatgaaatctaatgttcctggtgtcgaatgttttgtgcagCTTCATATGTATCACGCATATTAGGCAATCAGGTGAAAGAAGTGCTCCACGATTTATCTGTGGAAGCTGTGAAGAAGCAGCAGAGTAGACAGATCTCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC