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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatcactaaatttccacaaactccactgcaattgttgcttcagcttcgtttgtgctagagtttttgtgagattctttttgaaaatggtctgcgtctaagttgagttctggtgattgcagGTGGAATAGTTGTGAACGCATAAGCACCAACGAAAAATTGCATCACTTAGTGGGAATTACGAATTTGTTCGGTAAACAGAGTTATGAACGTGCTATCAAT

Basic information

species Physcomitrella patens
transcript PP1S6_369V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162261289|gb|FC437722.1|FC437722
EST:     TGCTTCAGAGGATTCCTCTTACTTCACTGGCCAAACCCTGCACCCGAACG                         GTGGAATAGTTGTGAACGCATAAGCACCAACGAAAAATTGCATCACTTAGT
genomic: TGCTTCAGAGGATTCCTCTTACTTCACTGGCCAAACCCTGCACCCGAACGgtaagtatca ... gtgattgcagGTGGAATAGTTGTGAACGCATAAGCACCAACGAAAAATTGCATCACTTAGT
EST: gi|162261290|gb|FC437723.1|FC437723
EST:     TGCTTCAGAGGATTCCTCTTACTTCACTGGCCAAACCCTGCACCCGAACG                         GTGGAATAGTTGTGAACGCATAAGCACCAACGAAAAATTGCATCACTTAGT
genomic: TGCTTCAGAGGATTCCTCTTACTTCACTGGCCAAACCCTGCACCCGAACGgtaagtatca ... gtgattgcagGTGGAATAGTTGTGAACGCATAAGCACCAACGAAAAATTGCATCACTTAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgagattctttttgaaaatggtctgcgtctaagttgagttctggtgattgcagGTGGAATAGTTGTGAACGCATAAGCACCAACGAAAAATTGCATCACTTAGTGGGAATTACGAATTTGTTCGGTAAACAGAGTTATGAACGTGCTATCAAT
      attctttttgaaaat  TA-rich tract