1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtcaggggccaatcctttccattgttttgcacaaagtcagaagtcagcggtttactgtgaaaactaacttattcccaactagacccgattactgatgtgaagggtggtgcagTGTTTAATCAGTTGGGGAAGCCACTGGGTCTAATCCGGCAACCTAGTGTATCAAACATGGGATTTGCTGGAAGGAACCTCGACACTTTATACATTCTCAA
species | Physcomitrella patens |
transcript | PP1S6_359V6.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGTCGACACTCAGGAGCGTGTTTATGTCAGCACTGTGGATGGGGTTCAAG TGTTTAATCAGTTGGGGAAGCCACTGGGTCTAATCCGGCAACCTAGTGTATEST: gi|162273546|gb|FC449691.1|FC449691
genomic: GGTCGACACTCAGGAGCGTGTTTATGTCAGCACTGTGGATGGGGTTCAAGgtcaggggcc ... ggtggtgcagTGTTTAATCAGTTGGGGAAGCCACTGGGTCTAATCCGGCAACCTAGTGTAT
EST: GGTCGACACTCAGGAGCGTGTTTATGTCAGCACTGTGGATGGGGTTCAAG TGTTTAATCAGTTGGGGAAGCCACTGGGTCTAATCCGGCAACCTAGTGTATEST: gi|162245116|gb|FC421590.1|FC421590
genomic: GGTCGACACTCAGGAGCGTGTTTATGTCAGCACTGTGGATGGGGTTCAAGgtcaggggcc ... ggtggtgcagTGTTTAATCAGTTGGGGAAGCCACTGGGTCTAATCCGGCAACCTAGTGTAT
EST: GGTCGACACTCAGGAGCGTGTTTATGTCAGCACTGTGGATGGGGTTCAAG TGTTTAATCAGTTGGGAAAGCCACTGGGTTTAATCCGGCAACCTAGTGTATEST: gi|37838536|gb|BJ596544.1|BJ596544
genomic: GGTCGACACTCAGGAGCGTGTTTATGTCAGCACTGTGGATGGGGTTCAAGgtcaggggcc ... ggtggtgcagTGTTTAATCAGTTGGGGAAGCCACTGGGTCTAATCCGGCAACCTAGTGTAT
EST: GGTCGACACTCAGGAGCGTGTTTATGTCAGCACTGTGGATGGGGTTCAAG TGTTTAATCAGTTGGGGAAGCCACTGGGTCTAATCCGGCAACCTAGTGTAT
genomic: GGTCGACACTCAGGAGCGTGTTTATGTCAGCACTGTGGATGGGGTTCAAGgtcaggggcc ... ggtggtgcagTGTTTAATCAGTTGGGGAAGCCACTGGGTCTAATCCGGCAACCTAGTGTAT
tgaaaactaacttattcccaactagacccgattactgatgtgaagggtggtgcagTGTTTAATCAGTTGGGGAAGCCACTGGGTCTAATCCGGCAACCTAGTGTATCAAACATGGGATTTGCTGGAAGGAACCTCGACACTTTATACATTCTCAA
taacttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaggggccaatcctttccattgttttgcacaaagtcagaagtcagcggtttactgtgaaaactaacttattcccaactagacccgattactgatgtgaagggtggtgcagTGTTTAATCAGTTGGGGAAGCCACTGGGTCTAATCCGGCAACCTAGTGTATCAAACATGGGATTTGCTGGAAGGAACCTCGACACTTTATACATTCTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA