1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgtcaatgtattttaatttccccgatatgatgtttgtaatgacatggatatttttgcttgtggctaatggacttttgtttttttatttttcacttcgcagGATCCCAATCCAGATGACCCCCTCAACCACGAGGCTGCAGAAGTTTTGAGGGACAATCCTCGGCAGTTTGAACAAAGTGTGCGAAGGTCGATGCTCGGTG
species | Physcomitrella patens |
transcript | PP1S6_291V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGTCCTTAGCATCAACTCCATCATTTATGGCCTTCAGTATTTGTTTCTG GATCCCAATCCAGATGACCCCCTCAACCACGAGGCTGCAGAAGTTTTGAGGEST: gi|162271024|gb|FC447429.1|FC447429
genomic: CTGTCCTTAGCATCAACTCCATCATTTATGGCCTTCAGTATTTGTTTCTGgtaagcgctt ... cacttcgcagGATCCCAATCCAGATGACCCCCTCAACCACGAGGCTGCAGAAGTTTTGAGG
EST: CTGTCCTTAGCATCAACTCCATCATTTATGGCCTTCAGTATTTGTTTCTG GATCCCAATCCAGATGACCCCCTCAACCACGAGGCTGCAGAAGTTTTGAGG
genomic: CTGTCCTTAGCATCAACTCCATCATTTATGGCCTTCAGTATTTGTTTCTGgtaagcgctt ... cacttcgcagGATCCCAATCCAGATGACCCCCTCAACCACGAGGCTGCAGAAGTTTTGAGG
ggatatttttgcttgtggctaatggacttttgtttttttatttttcacttcgcagGATCCCAATCCAGATGACCCCCTCAACCACGAGGCTGCAGAAGTTTTGAGGGACAATCCTCGGCAGTTTGAACAAAGTGTGCGAAGGTCGATGCTCGGTG
ggctaat putative branch site (score: 2)
cttttgtttttttatt putative PPT
ttttgtttttttattt TA-rich tract