1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagcttctaagtgttttccttgcgacagttaatcaagatattgctgcgaatcaggccatattttgcgagcagacttatttggctcaacctctaatgaaatcattcgttctctgcatttttacaagtgtgtgccatgtatcgagtttcttattgtgtgtttctggtgcagTCCGTCGCGTTCCCGCTCTCGGTCTCCTCGAGGGCACAAGAGGTCGTCTCGCAGAAGTGTTTCCCGTAGCCGAAGTCGCAGCTTCAG
species | Physcomitrella patens |
transcript | PP1S69_23V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGTGGGCACATAGAGCGTAATTGCCGCAACAGTCCAAGGCCGACAAGCAG TCCGTCGCGTTCCCGCTCTCGGTCTCCTCGAGGGCACAAGAGGTCGTCTCGEST: gi|208368179|gb|DC951473.1|DC951473
genomic: CGTGGGCACATAGAGCGTAATTGCCGCAACAGTCCAAGGCCGACAAGCAGgtgagcttct ... tctggtgcagTCCGTCGCGTTCCCGCTCTCGGTCTCCTCGAGGGCACAAGAGGTCGTCTCG
EST: CGTGGGCACATAGAGCGTAATTGCCGCAACAGTCCAAGGCCGACAAGCAG TCCGTCGCGTTCCCGCTCTCGGTCTCCTCGAGGGCACAAGAGGTCGTCTCGEST: gi|208376896|gb|DC918795.1|DC918795
genomic: CGTGGGCACATAGAGCGTAATTGCCGCAACAGTCCAAGGCCGACAAGCAGgtgagcttct ... tctggtgcagTCCGTCGCGTTCCCGCTCTCGGTCTCCTCGAGGGCACAAGAGGTCGTCTCG
EST: CGTGGGCACATAGAGCGTAATTGCCGCAACAGTCCAAGGCCGACAAGCAG TCCGTCGCGTTCCCGCTCTCGGTCTCCTCGAGGGCACAAGAGGTCGTCTCGEST: gi|162214291|gb|FC390010.1|FC390010
genomic: CGTGGGCACATAGAGCGTAATTGCCGCAACAGTCCAAGGCCGACAAGCAGgtgagcttct ... tctggtgcagTCCGTCGCGTTCCCGCTCTCGGTCTCCTCGAGGGCACAAGAGGTCGTCTCG
EST: CGTGGGCACATAGAGCGTAATTGCCGCAACAGTCCAAGGCCGACAAGCAG TCCGTCGCGTTCCCGCTCTCGGTCTCCTCGAGGGCACAAGAGGTCGTCTCGEST: gi|162214292|gb|FC390011.1|FC390011
genomic: CGTGGGCACATAGAGCGTAATTGCCGCAACAGTCCAAGGCCGACAAGCAGgtgagcttct ... tctggtgcagTCCGTCGCGTTCCCGCTCTCGGTCTCCTCGAGGGCACAAGAGGTCGTCTCG
EST: CGTGGGCACATAGAGCGTAATTGCCGCAACAGTCCAAGGCCGACAAGCAG TCCGTCGCGTTCCCGCTCTCGGTCTCCTCGAGGGCACAAGAGGTCGTCTCG
genomic: CGTGGGCACATAGAGCGTAATTGCCGCAACAGTCCAAGGCCGACAAGCAGgtgagcttct ... tctggtgcagTCCGTCGCGTTCCCGCTCTCGGTCTCCTCGAGGGCACAAGAGGTCGTCTCG
atttttacaagtgtgtgccatgtatcgagtttcttattgtgtgtttctggtgcagTCCGTCGCGTTCCCGCTCTCGGTCTCCTCGAGGGCACAAGAGGTCGTCTCGCAGAAGTGTTTCCCGTAGCCGAAGTCGCAGCTTCAG
tgtttct CT-rich tract
tttcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcttctaagtgttttccttgcgacagttaatcaagatattgctgcgaatcaggccatattttgcgagcagacttatttggctcaacctctaatgaaatcattcgttctctgcatttttacaagtgtgtgccatgtatcgagtttcttattgtgtgtttctggtgcagTCCGTCGCGTTCCCGCTCTCGGTCTCCTCGAGGGCACAAGAGGTCGTCTCGCAGAAGTGTTTCCCGTAGCCGAAGTCGCAGCTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT