1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gaatttttcagtatgtcagcatttaattatttgttacacatgaagcttcttccttgtttcattctgatatgtgagttgggaatatgtgatctgcaaccagAGACGGGGAGAACGGAGCACATAACCCATTGGATTTGATTTGCGGCGGCTGCTCAGCTGCTGCATGTGGGCATGGTGTGTGCGCTAAAGGACACGGGAAG
species | Physcomitrella patens |
transcript | PP1S69_148V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGCCGTGTTCCTTACTGTGGTGGCAAGCGTGATTGCTTAAGAATTGAAAG AGACGGGGAGAACGGAGCACATAACCCATTGGATTTGATTTGCGGCGGCTGEST: gi|37833053|gb|BJ591065.1|BJ591065
genomic: TGCCGTGTTCCTTACTGTGGTGGCAAGCGTGATTGCTTAAGAATTGAAAGgttgagattc ... ctgcaaccagAGACGGGGAGAACGGAGCACATAACCCATTGGATTTGATTTGCGGCGGCTG
EST: TGCCGTGTTCCTTACTGTGGTGGCAAGCGTGATTGCTTAAGAATTGAAAG AGACGGGGAGAACGGAGCACATAACCCATTGGATTTGATTTGCGGCGGCTGEST: gi|162238711|gb|FC419035.1|FC419035
genomic: TGCCGTGTTCCTTACTGTGGTGGCAAGCGTGATTGCTTAAGAATTGAAAGgttgagattc ... ctgcaaccagAGACGGGGAGAACGGAGCACATAACCCATTGGATTTGATTTGCGGCGGCTG
EST: TGCCGTGTTCCTTACTGTGGTGGCAAGCGTGATTGCTTAAGAATTGAAAG AGACGGGGAGAACGGAGCACATAACCCATTGGATTTGATTTGCGGCGGCTGEST: gi|162238710|gb|FC419034.1|FC419034
genomic: TGCCGTGTTCCTTACTGTGGTGGCAAGCGTGATTGCTTAAGAATTGAAAGgttgagattc ... ctgcaaccagAGACGGGGAGAACGGAGCACATAACCCATTGGATTTGATTTGCGGCGGCTG
EST: TGCCGTGTTCCTTACTGTGGTGGCAAGCGTGATTGCTTAAGAATTGAAAG AGACGGGGAGAACGGAGCACATAACCCATTGGATTTGATTTGCGGCGGCTG
genomic: TGCCGTGTTCCTTACTGTGGTGGCAAGCGTGATTGCTTAAGAATTGAAAGgttgagattc ... ctgcaaccagAGACGGGGAGAACGGAGCACATAACCCATTGGATTTGATTTGCGGCGGCTG
cttcttccttgtttcattctgatatgtgagttgggaatatgtgatctgcaaccagAGACGGGGAGAACGGAGCACATAACCCATTGGATTTGATTTGCGGCGGCTGCTCAGCTGCTGCATGTGGGCATGGTGTGTGCGCTAAAGGACACGGGAAG
ttctgat putative branch site (score: 3)
tttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaatttttcagtatgtcagcatttaattatttgttacacatgaagcttcttccttgtttcattctgatatgtgagttgggaatatgtgatctgcaaccagAGACGGGGAGAACGGAGCACATAACCCATTGGATTTGATTTGCGGCGGCTGCTCAGCTGCTGCATGTGGGCATGGTGTGTGCGCTAAAGGACACGGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - cacatga