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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agttaagttgctactgtatgatatgctggacggtgtagtgaaaatacaattctttccaaaggataaatttctgactagatcaacttaagactgtgttcagGATGCAGCGCAAGAAAGGCCAATTTGCGTCTTCACGGCCAACTCAGGAAGAGGGCTCCCCTGTTTCAAACTGGGATGGTACCCAAGCCTCGGGACAACCT

Basic information

species Physcomitrella patens
transcript PP1S69_103V6.3
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37823403|gb|BJ581469.1|BJ581469
EST:     TGTTATGATAAGAAAATTCGTTACACTGTTCGTAAAGAAGTTGCTCAAAG                         GATGCAGCGCAAGAAAGGCCAATTTGCGTCTTCACGGCCAACTCAGGAAGA
genomic: TGTTATGATAAGAAAATTCGTTACACTGTTCGTAAAGAAGTTGCTCAAAGgtagtttttg ... ctgtgttcagGATGCAGCGCAAGAAAGGCCAATTTGCGTCTTCACGGCCAACTCAGGAAGA
EST: gi|162193633|gb|FC371238.1|FC371238
EST:     TGTTATGATAAGAAAATTCGTTACACTGTTCGTAAAGAAGTTGCTCAAAG                         GATGCAGCGCAAGAAAGGCCAATTTGCGTCTTCACGGCCAACTCAGGAAGA
genomic: TGTTATGATAAGAAAATTCGTTACACTGTTCGTAAAGAAGTTGCTCAAAGgtagtttttg ... ctgtgttcagGATGCAGCGCAAGAAAGGCCAATTTGCGTCTTCACGGCCAACTCAGGAAGA
EST: gi|162273741|gb|FC449464.1|FC449464
EST:     TGTTATGATAAGAAAATTCGTTACACTGTTCGTAAAGAAGTTGCTCAAAG                         GATGCAGCGCAAGAAAGGCCAATTTGCGTCTTCACGGCCAACTCAGGAAGA
genomic: TGTTATGATAAGAAAATTCGTTACACTGTTCGTAAAGAAGTTGCTCAAAGgtagtttttg ... ctgtgttcagGATGCAGCGCAAGAAAGGCCAATTTGCGTCTTCACGGCCAACTCAGGAAGA
EST: gi|162181522|gb|FC358136.1|FC358136
EST:     TGTTATGATAAGAAAATTCGTTACACTGTTCGTAAAGAAGTTGCTCAAAGACTGTGTTCAG               
genomic: TGTTATGATAAGAAAATTCGTTACACTGTTCGTAAAGAAGTTGCTC--A-A--------AGgtagtttttg ...


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaattctttccaaaggataaatttctgactagatcaacttaagactgtgttcagGATGCAGCGCAAGAAAGGCCAATTTGCGTCTTCACGGCCAACTCAGGAAGAGGGCTCCCCTGTTTCAAACTGGGATGGTACCCAAGCCTCGGGACAACCT
                       ttctgac  putative branch site (score: 2)
                 ataaatttct  TA-rich tract