1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgatacaccaaggaattatgaatgactttctcggtggattgactagaaactgcgtttttgcaaggatgctcttactgttgcaaagatcatggtaatgatgtactcaataattactcatttcattgtgcacagAGATGAAATCGCAGGTTGTAGTGAGAAGGCGTACGATTCGTTGTCATTAGTGGAGGCCAAGAAGATACTGATGTTTGCGTCCGATCAAGAGTTGCTGGCA
species | Physcomitrella patens |
transcript | PP1S68_29V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCACATGAAACTTATGTGTACTTTATGGACCTTCTTGCCAAGACTGTCAG AGATGAAATCGCAGGTTGTAGTGAGAAGGCGTACGAATCGTTGTCATTAGTEST: gi|18337739|gb|BJ169763.1|BJ169763
genomic: CCACATGAAACTTATGTGTACTTTATGGACCTTCTTGCCAAGACTGTCAGgtatgataca ... ttgtgcacagAGATGAAATCGCAGGTTGTAGTGAGAAGGCGTACGATTCGTTGTCATTAGT
EST: CACATGAAAACTTATGTGTACTTTATGGACCTTCTTGCCAAGACTGTCAG AGATGAAATCGCAGGTTGTAGTGAGAAGGCGTACGATTCGTTGTCATTAGTEST: gi|37840297|gb|BJ598305.1|BJ598305
genomic: CACATG-AAACTTATGTGTACTTTATGGACCTTCTTGCCAAGACTGTCAGgtatgataca ... ttgtgcacagAGATGAAATCGCAGGTTGTAGTGAGAAGGCGTACGATTCGTTGTCATTAGT
EST: CCACATGGAACTTATGTGTACTTTATGGACCTTCTTGCCAAGACTGTCAG AGATGAAATCGCAGGTTGTAGTGAGAAGGCGTACGATTCGTTGTCATTAGTEST: gi|162264779|gb|FC440346.1|FC440346
genomic: CCACATGAAACTTATGTGTACTTTATGGACCTTCTTGCCAAGACTGTCAGgtatgataca ... ttgtgcacagAGATGAAATCGCAGGTTGTAGTGAGAAGGCGTACGATTCGTTGTCATTAGT
EST: CCACATGAAACTTATGTGTACTTTATGGACCTTCTTGCCAAGACTGTCAG AGATGAAATCGCAGGTTGTAGTGAGAAGGCGTACGATTCGTTGTCATTAGTEST: gi|162209020|gb|FC385572.1|FC385572
genomic: CCACATGAAACTTATGTGTACTTTATGGACCTTCTTGCCAAGACTGTCAGgtatgataca ... ttgtgcacagAGATGAAATCGCAGGTTGTAGTGAGAAGGCGTACGATTCGTTGTCATTAGT
EST: CCACATGAAACTTATGTGTACTTTATGGACCTTCTTGCCAAGACTGTCAG AGATGAAATCGCAGGTTGTAGTGAGAAGGCGTACGATTCGTTGTCATTAGTEST: gi|162209019|gb|FC385571.1|FC385571
genomic: CCACATGAAACTTATGTGTACTTTATGGACCTTCTTGCCAAGACTGTCAGgtatgataca ... ttgtgcacagAGATGAAATCGCAGGTTGTAGTGAGAAGGCGTACGATTCGTTGTCATTAGT
EST: CCACATGAAACTTATGTGTACTTTATGGACCTTCTTGCCAAGACTGTCAG AGATGAAATCGCAGGTTGTAGTGAGAAGGCGTACGATTCGTTGTCATTAGTEST: gi|162264778|gb|FC440345.1|FC440345
genomic: CCACATGAAACTTATGTGTACTTTATGGACCTTCTTGCCAAGACTGTCAGgtatgataca ... ttgtgcacagAGATGAAATCGCAGGTTGTAGTGAGAAGGCGTACGATTCGTTGTCATTAGT
EST: CCACATGAAACTTATGTGTACTTTATGGACCTTCTTGCCAAGACTGTCAG AGATGAAATCCCAGGTTGTAGTGAGAAGGCGTACGATTCGTTGTCATTAGTEST: gi|208387224|gb|DC945523.1|DC945523
genomic: CCACATGAAACTTATGTGTACTTTATGGACCTTCTTGCCAAGACTGTCAGgtatgataca ... ttgtgcacagAGATGAAATCGCAGGTTGTAGTGAGAAGGCGTACGATTCGTTGTCATTAGT
EST: CCACATGAAACTTATGTGTACTTTATGGACCTTCTTGCCAAGACTGTCAG AGATGAAATCGCAGGTTGTAGTGAGAAGGCGTACGATTCGTTGTCATTAGTEST: gi|208358537|gb|DC946498.1|DC946498
genomic: CCACATGAAACTTATGTGTACTTTATGGACCTTCTTGCCAAGACTGTCAGgtatgataca ... ttgtgcacagAGATGAAATCGCAGGTTGTAGTGAGAAGGCGTACGATTCGTTGTCATTAGT
EST: CCACATGAAACTTATGTGTACTTTATGGACCTTCTTGCCAAGACTGTCGG AGATGAAATCGCAGGTTGTAGTGAGAAGGCGTACGATTCGTTGTCATTAGT
genomic: CCACATGAAACTTATGTGTACTTTATGGACCTTCTTGCCAAGACTGTCAGgtatgataca ... ttgtgcacagAGATGAAATCGCAGGTTGTAGTGAGAAGGCGTACGATTCGTTGTCATTAGT
ttgcaaagatcatggtaatgatgtactcaataattactcatttcattgtgcacagAGATGAAATCGCAGGTTGTAGTGAGAAGGCGTACGATTCGTTGTCATTAGTGGAGGCCAAGAAGATACTGATGTTTGCGTCCGATCAAGAGTTGCTGGCA
tttcatt CT-rich tract
aataattactcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatacaccaaggaattatgaatgactttctcggtggattgactagaaactgcgtttttgcaaggatgctcttactgttgcaaagatcatggtaatgatgtactcaataattactcatttcattgtgcacagAGATGAAATCGCAGGTTGTAGTGAGAAGGCGTACGATTCGTTGTCATTAGTGGAGGCCAAGAAGATACTGATGTTTGCGTCCGATCAAGAGTTGCTGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG