1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgtggtccttctcctcttcgccatattttttcttttgtagtctcactcctttcttacatgttcggtggtcatttactagagatagttgttatttttatgtcatacattgtgttaatgccgacctagaattctttttgtcgcctaggtcatatatgctaaatctgttcacctttactttgtatttcagATCGCTCGGAAGTTTTTGAAGGCTACAAGGAAAACTGTCGATCTAGTTGGTGACGAGAAAATGAAGGCTAGTAACAGTGTGAGACATTTATTACTTCCGG
species | Physcomitrella patens |
transcript | PP1S67_231V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGGTGCAAACTCTACTGTTCAGTGCGACACTACCCACTTGGGTTCAACAG ATCGCTCGGAAGTTTTTGAAGGCTACAAGGAAAACTGTCGATCTAGTTGGTEST: gi|162173529|gb|FC350103.1|FC350103
genomic: AGGTGCAAACTCTACTGTTCAGTGCGACACTACCCACTTGGGTTCAACAGgtgtggtcct ... tgtatttcagATCGCTCGGAAGTTTTTGAAGGCTACAAGGAAAACTGTCGATCTAGTTGGT
EST: AGGTGCAAACTCTACTGTTCAGTGCGACACTACCCACTTGGGTTCAACAG ATCGCTCGGAAGTTTTTGAAGGCTACAAGGAAAACTGTCGATCTAGTTGGTEST: gi|162203869|gb|FC379966.1|FC379966
genomic: AGGTGCAAACTCTACTGTTCAGTGCGACACTACCCACTTGGGTTCAACAGgtgtggtcct ... tgtatttcagATCGCTCGGAAGTTTTTGAAGGCTACAAGGAAAACTGTCGATCTAGTTGGT
EST: AGGTGCAAACTCTACTGTTCAGTGCGACACTACCCACTTGGGTTCAACAG ATCGCTCGGAAGTTTTTGAAGGCTACAAGGAAAACTGTCGATCTAGTTGGTEST: gi|100415313|gb|BY975254.1|BY975254
genomic: AGGTGCAAACTCTACTGTTCAGTGCGACACTACCCACTTGGGTTCAACAGgtgtggtcct ... tgtatttcagATCGCTCGGAAGTTTTTGAAGGCTACAAGGAAAACTGTCGATCTAGTTGGT
EST: AGGTGCAAACTCTACTGTTCAGTGCGACACTACCCACTTGGGTTCAACAG ATCGCTCGGAAGTTTTTGAAGGCTACAAGGAAAACTGTCGATCTAGTTGGTEST: gi|162165696|gb|FC342263.1|FC342263
genomic: AGGTGCAAACTCTACTGTTCAGTGCGACACTACCCACTTGGGTTCAACAGgtgtggtcct ... tgtatttcagATCGCTCGGAAGTTTTTGAAGGCTACAAGGAAAACTGTCGATCTAGTTGGT
EST: AGGTGCAAACTCTACTGTTCAGTGCGACACTACCCACTTGGGTTCAACAG ATCGCTCGGAAGTTTTTGAAGGCTACAAGGAAAACTGTCGATCTAGTTGGTEST: gi|162155569|gb|FC331013.1|FC331013
genomic: AGGTGCAAACTCTACTGTTCAGTGCGACACTACCCACTTGGGTTCAACAGgtgtggtcct ... tgtatttcagATCGCTCGGAAGTTTTTGAAGGCTACAAGGAAAACTGTCGATCTAGTTGGT
EST: AGGTGCAAACTCTACTGTTCAGTGCGACACTACCCACTTGGGTTCAACAG ATCGCTCGGAAGTTTTTGAAGGCTACAAGGAAAACTGTCGATCTAGTTGGTEST: gi|162254871|gb|FC430848.1|FC430848
genomic: AGGTGCAAACTCTACTGTTCAGTGCGACACTACCCACTTGGGTTCAACAGgtgtggtcct ... tgtatttcagATCGCTCGGAAGTTTTTGAAGGCTACAAGGAAAACTGTCGATCTAGTTGGT
EST: AGGTGCAAACTCTACTGTTCAGTGCGACACTACCCACTTGGGTTCAACAG ATCGCTCGGAAGTTTTTGAAGGCTACAAGGAAAACTGTCGATCTAGTTGGT
genomic: AGGTGCAAACTCTACTGTTCAGTGCGACACTACCCACTTGGGTTCAACAGgtgtggtcct ... tgtatttcagATCGCTCGGAAGTTTTTGAAGGCTACAAGGAAAACTGTCGATCTAGTTGGT
ttttgtcgcctaggtcatatatgctaaatctgttcacctttactttgtatttcagATCGCTCGGAAGTTTTTGAAGGCTACAAGGAAAACTGTCGATCTAGTTGGTGACGAGAAAATGAAGGCTAGTAACAGTGTGAGACATTTATTACTTCCGG
tgctaaa putative branch site (score: 15)
ttcacctttacttt putative PPT
tttactttgtattt TA-rich tract