1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgaggcgaaacgattgtgggtgcatgggtgcgggtcggggggatgaggagagtggagtgtgagctggtattgggagatggagcagaggggttgctgatgtgtgtgcggaggtgctgatggtgttggatgttggtgtggcagGTTGCACATACTGGAGTTGTGGACGGGAGGGTTCCTGATGTTCTGCGCTGTGTACGACTTCTATTTCCAGGGGAAGAACCACTTTTACGTGTACTTGTTT
species | Physcomitrella patens |
transcript | PP1S65_194V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAGAGGATGGCGAGCAACATGCTGGCCAGGGGATGGAAGATGTCGGAGAG GTTGCACATACTGGAGTTGTGGACGGGAGGGTTCCTGATGTTCTGCGCTGTEST: gi|18333034|gb|BJ165048.1|BJ165048
genomic: CAGAGGATGGCGAGCAACATGCTGGCCAGGGGATGGAAGATGTCGGAGAGgtgaggcgaa ... ggtgtggcagGTTGCACATACTGGAGTTGTGGACGGGAGGGTTCCTGATGTTCTGCGCTGT
EST: CAGAGGATGGCGAGCAACATGCTGGCCAGGGGATGGAAGATGTCGGAGAG GTTGCACATACTGGAGTTGTGGACGGGAGGGTTCCTGATGTTCTGCGCTGTEST: gi|162260977|gb|FC436890.1|FC436890
genomic: CAGAGGATGGCGAGCAACATGCTGGCCAGGGGATGGAAGATGTCGGAGAGgtgaggcgaa ... ggtgtggcagGTTGCACATACTGGAGTTGTGGACGGGAGGGTTCCTGATGTTCTGCGCTGT
EST: CAGAGGATGGCGAGCAACATGCTGGCCAGGGGATGGAAGATGTCGGAGAG GTTGCACATACTGGAGTTGTGGACGGGAGGGTTCCTGATGTTCTGCGCTGTEST: gi|37852322|gb|BJ610330.1|BJ610330
genomic: CAGAGGATGGCGAGCAACATGCTGGCCAGGGGATGGAAGATGTCGGAGAGgtgaggcgaa ... ggtgtggcagGTTGCACATACTGGAGTTGTGGACGGGAGGGTTCCTGATGTTCTGCGCTGT
EST: CAGAGGATGGCGAGCAACATGCTGGCCAGGGGATGGAAGATGTCGGAGAG GTTGCACATACTGGAGTTGTGGACGGGAGGGTTCCTGATGTTCTGCGCTGTEST: gi|37847387|gb|BJ605395.1|BJ605395
genomic: CAGAGGATGGCGAGCAACATGCTGGCCAGGGGATGGAAGATGTCGGAGAGgtgaggcgaa ... ggtgtggcagGTTGCACATACTGGAGTTGTGGACGGGAGGGTTCCTGATGTTCTGCGCTGT
EST: CAGAGGATGGCGAGCAACATGCTGGCCAGGGGATGGAAGATGTCGGAGAG GTTGCACATACTGGAGTTGTGGACGGGAGGGTTCCTGATGTTCTGCGCTGTEST: gi|18338777|gb|BJ170802.1|BJ170802
genomic: CAGAGGATGGCGAGCAACATGCTGGCCAGGGGATGGAAGATGTCGGAGAGgtgaggcgaa ... ggtgtggcagGTTGCACATACTGGAGTTGTGGACGGGAGGGTTCCTGATGTTCTGCGCTGT
EST: CAGAGGATGGCGAGCAACATGCTGGCCAGGGGATGGAAGATGTCGGAGAG GTTGCACATACTGGAGTTGTGGACGGGAGGGTTCCTGATGTTCTGCGCTGTEST: gi|37850801|gb|BJ608809.1|BJ608809
genomic: CAGAGGATGGCGAGCAACATGCTGGCCAGGGGATGGAAGATGTCGGAGAGgtgaggcgaa ... ggtgtggcagGTTGCACATACTGGAGTTGTGGACGGGAGGGTTCCTGATGTTCTGCGCTGT
EST: CAGAGGATGGCGAGCAACATGCTGGCCAGGGGATGGAAGATGTCGGAGAG GTTGCACATACTGGAGTTGTGGACGGGAGGGTTCCTGATGTTCTGCGCTGT
genomic: CAGAGGATGGCGAGCAACATGCTGGCCAGGGGATGGAAGATGTCGGAGAGgtgaggcgaa ... ggtgtggcagGTTGCACATACTGGAGTTGTGGACGGGAGGGTTCCTGATGTTCTGCGCTGT
ggggttgctgatgtgtgtgcggaggtgctgatggtgttggatgttggtgtggcagGTTGCACATACTGGAGTTGTGGACGGGAGGGTTCCTGATGTTCTGCGCTGTGTACGACTTCTATTTCCAGGGGAAGAACCACTTTTACGTGTACTTGTTT
tgctgat putative branch site (score: 18)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggcgaaacgattgtgggtgcatgggtgcgggtcggggggatgaggagagtggagtgtgagctggtattgggagatggagcagaggggttgctgatgtgtgtgcggaggtgctgatggtgttggatgttggtgtggcagGTTGCACATACTGGAGTTGTGGACGGGAGGGTTCCTGATGTTCTGCGCTGTGTACGACTTCTATTTCCAGGGGAAGAACCACTTTTACGTGTACTTGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC