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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttaatgtctcctaccaaaaactgtgtacagcttaaccgcttgttcagatgtttgaatgactatccctttcctacgattgatccttttcttttactttcatgaagGACTTGGGAGGGTCTCTTGGGCGGGAAGCTGCCACTGGAAGAGGTGTGCTATATGCAACAGAGGCTCTGCTTAAGGATCATAACCTCAGCATTAGGGGCC

Basic information

species Physcomitrella patens
transcript PP1S62_236V6.7
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162176130|gb|FC351079.1|FC351079
EST:     ACTCGAAATTTCATGGGTATACTCCGGCCGTCGTAACTGGTAAACCGGTG                         GACTTGGGAGGGTCTCTTGGGCGGGAAGCTGCCACTGGAAGAGGTGTGCTA
genomic: ACTCGAAATTTCATGGGTATACTCCGGCCGTCGTAACTGGTAAACCGGTGgtaagttaat ... tttcatgaagGACTTGGGAGGGTCTCTTGGGCGGGAAGCTGCCACTGGAAGAGGTGTGCTA
EST: gi|162253971|gb|FC430215.1|FC430215
EST:     ACTCGAAATTTCATGGGTATACTCCGGCCGTCGTAACTGGTAAACCGGTG                         GACTTGGGAGGGTCTCTTGGGCGGGAAGCTGCCACTGGAAGAGGTGTGCTA
genomic: ACTCGAAATTTCATGGGTATACTCCGGCCGTCGTAACTGGTAAACCGGTGgtaagttaat ... tttcatgaagGACTTGGGAGGGTCTCTTGGGCGGGAAGCTGCCACTGGAAGAGGTGTGCTA
EST: gi|67573617|gb|BJ946441.1|BJ946441
EST:     ACTCGAAATTTCATGGGTATACTCCGGCCGTCGTAACTGGTAAACCGGTG                         GACTTGGGAGGGTCTCTTGGGCGGGAAGCTGCCACTGGAAGAGGTGTGCTA
genomic: ACTCGAAATTTCATGGGTATACTCCGGCCGTCGTAACTGGTAAACCGGTGgtaagttaat ... tttcatgaagGACTTGGGAGGGTCTCTTGGGCGGGAAGCTGCCACTGGAAGAGGTGTGCTA
EST: gi|100396442|gb|BY990131.1|BY990131
EST:     ACTCGAAATTTCATGGGTATACTCCGGCCGTCGTAACTGGTAAACCGGTG                         GACTTGGGAGGGTCTCTTGGGCGGG
genomic: ACTCGAAATTTCATGGGTATACTCCGGCCGTCGTAACTGGTAAACCGGTGgtaagttaat ... tttcatgaagGACTTGGGAGGGTCTCTTGGGCGGG
EST: gi|162194068|gb|FC370243.1|FC370243
EST:     ACTCGAAATTTCATGGGTATACTCCGGCCGTCGTAACTGGTAAACCGGTG                         GACTTGGGAGGGTCTCTTGGGCGGGAAGCTGCCACTGGAAGAGGTGTGCTA
genomic: ACTCGAAATTTCATGGGTATACTCCGGCCGTCGTAACTGGTAAACCGGTGgtaagttaat ... tttcatgaagGACTTGGGAGGGTCTCTTGGGCGGGAAGCTGCCACTGGAAGAGGTGTGCTA
EST: gi|162275836|gb|FC451397.1|FC451397
EST:     ACTCGAAATTTCATGGGTATACTCCGGCCGTCGTAACTGGTAAACCGGTG                         GACTTGGGAGGGTCTCTTGGGCGGGAAGCTGCCACTGGAAGAGGTGTGCTA
genomic: ACTCGAAATTTCATGGGTATACTCCGGCCGTCGTAACTGGTAAACCGGTGgtaagttaat ... tttcatgaagGACTTGGGAGGGTCTCTTGGGCGGGAAGCTGCCACTGGAAGAGGTGTGCTA
EST: gi|162162143|gb|FC337717.1|FC337717
EST:     ACTCGAAATTTCATGGGTATACTCCGGCCGTCGTAACTGGTAAACCGGTG                         GACTTGGGAGGGTCTCTTGNGCGGGAAGCTGCCACTGGAAGAGGTGTGCTA
genomic: ACTCGAAATTTCATGGGTATACTCCGGCCGTCGTAACTGGTAAACCGGTGgtaagttaat ... tttcatgaagGACTTGGGAGGGTCTCTTGGGCGGGAAGCTGCCACTGGAAGAGGTGTGCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttgaatgactatccctttcctacgattgatccttttcttttactttcatgaagGACTTGGGAGGGTCTCTTGGGCGGGAAGCTGCCACTGGAAGAGGTGTGCTATATGCAACAGAGGCTCTGCTTAAGGATCATAACCTCAGCATTAGGGGCC
                         gattgat  putative branch site (score: 4)
                           ttgatccttttctttt  CT-rich tract
                                  ttttcttttacttt  TA-rich tract