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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctattgtgttttgtaataagtcaattatagtagtaggcttttatataaagatcagagatgatgttctttccatctgacttgtggaactggtcaaatacagACAGAGAAAACGGTCTTTGTTGTGTTCTTTTCTGGAGAGCGTGCCAAATCCAAGGTTGTCAAAATCTGTGAGGCTTTTGGGGCCAATCGCTATCCCTTCC

Basic information

species Physcomitrella patens
transcript PP1S60_200V6.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S60_200V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: AT2G21410.1 (Arabidopsis thaliana), 3'ss of exon 6
ctattgtgttttgtaataagtcaattatagtagtaggcttttatataaagatcagagatgatgttctttccatctgacttgtggaactggtcaaa--tacagACAGAGAAAACGGTCTTTGTTGTGTTCTTTTCTGGAGAGCGTGCCAAATCCAAGGTTGTCAAAATCTGTGAGGCTTTTGGGGCCAATCGCTATCCCTTCC
  |   | |||| ||    |     |      ||  |     |||||   ||      ||   ||  |   |  |||||| ||         ||   ||||| | |||||||  || ||||| || |||| |||||| ||  | || |||  |||  || | || || ||||| ||||||||||||||||||||||| ||| 
--aagatattttctacatggaatcctggttctgtcagaaaaaatatactcattctgtttgcctttgctaggaattgacttttgatctaaactaatgttacagGCTGAGAAAAATGTATTTGTCGTCTTCTATTCTGGGGAAAGAGCAAAAAGCAAAATTCTTAAGATATGTGAAGCTTTTGGGGCCAATCGCTATCCTTTCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaagatcagagatgatgttctttccatctgacttgtggaactggtcaaatacagACAGAGAAAACGGTCTTTGTTGTGTTCTTTTCTGGAGAGCGTGCCAAATCCAAGGTTGTCAAAATCTGTGAGGCTTTTGGGGCCAATCGCTATCCCTTCC
                          atctgac  putative branch site (score: 3)
                                             tcaaata  TA-rich tract