1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...tgggattcgttgggcggtgcgcctctgcaaagcgatgcttttcatggaattgaggattcgcagggtttcgttactgaatcttgacccttgacccttgcagTTGGACAAGAGGTTGTTTACAACATATTTCAAGGAGAATAAAGTTGATGAAGTGCCTTCTTATGCGGATCAG
species | Physcomitrella patens |
transcript | PP1S60_139V6.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGTCAGGCCAGTACCTTCTAAATATGCCGATTGCGGTTGACAAATTCAAG TTGGACAAGAGGTTGTTTACAACATATTTCAAGGAGAATAAAGTTGATGAAEST: gi|100390135|gb|BY989215.1|BY989215
genomic: AGTCAGGCCAGTACCTTCTAAATATGCCGATTGCGGTTGACAAATTCAAGgtgcttcaac ... acccttgcagTTGGACAAGAGGTTGTTTACAACATATTTCAAGGAGAATAAAGTTGATGAA
EST: AGTCAGGCCAGTACCTTCTAAATATGCCGATTGCGGTTGACAAATTCAAG TTGGACAAGAGGTTGTTTACAACATATTTCAAGGAGAATAAAEST: gi|100404207|gb|BY955309.1|BY955309
genomic: AGTCAGGCCAGTACCTTCTAAATATGCCGATTGCGGTTGACAAATTCAAGgtgcttcaac ... acccttgcagTTGGACAAGAGGTTGTTTACAACATATTTCAAGGAGAATAAA
EST: AGTCAGGCCAGTACCTTCTAAATATGCCGATTGCGGTTGACAAATTCAAG TTGGACAAGAGGTTGTTTACAACATATTTTCA-GGAGAATAAAGTTGATGAEST: gi|100387548|gb|BY988419.1|BY988419
genomic: AGTCAGGCCAGTACCTTCTAAATATGCCGATTGCGGTTGACAAATTCAAGgtgcttcaac ... acccttgcagTTGGACAAGAGGTTGTTTACAACATATTT-CAAGGAGAATAAAGTTGATGA
EST: AGTCAGGCCAGTACCTTCTAAATATGCCGATTGCGGTTGACAAATTCAAG TTGGACAAGAGGTTGTTTACAACATATTTCAAGGAGAATAAAGTTGATGAAEST: gi|100401308|gb|BY990937.1|BY990937
genomic: AGTCAGGCCAGTACCTTCTAAATATGCCGATTGCGGTTGACAAATTCAAGgtgcttcaac ... acccttgcagTTGGACAAGAGGTTGTTTACAACATATTTCAAGGAGAATAAAGTTGATGAA
EST: AGTCAGGCCAGTACCTTCTAAATATGCCGATTGCGGTTGACAAATTCAAG TTGGACAAGAGGTTGTTTACAACATATTTCAAGGAGAATAAAGTTGATGAA
genomic: AGTCAGGCCAGTACCTTCTAAATATGCCGATTGCGGTTGACAAATTCAAGgtgcttcaac ... acccttgcagTTGGACAAGAGGTTGTTTACAACATATTTCAAGGAGAATAAAGTTGATGAA
ggaattgaggattcgcagggtttcgttactgaatcttgacccttgacccttgcagTTGGACAAGAGGTTGTTTACAACATATTTCAAGGAGAATAAAGTTGATGAAGTGCCTTCTTATGCGGATCAG
cccttgc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgggattcgttgggcggtgcgcctctgcaaagcgatgcttttcatggaattgaggattcgcagggtttcgttactgaatcttgacccttgacccttgcagTTGGACAAGAGGTTGTTTACAACATATTTCAAGGAGAATAAAGTTGATGAAGTGCCTTCTTATGCGGATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA