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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctaatatgtttacggattactaaaagattctgttttaatgggaactttcttgaaaatgtactaaccacgacttaacatcaatgaattgcataaacgacaactctctagtgtcgatttatctgacaaagaatctgttttctgttgtctgaatatagGTAACATTTTAAACTTCAACGTGGGAGCTGGTGTGGATCTCAGCATTCCTCGAAGCTTTTGGACACGATTAGCAGGGAAATATGGCAACAAATTTTACTG

Basic information

species Physcomitrella patens
transcript PP1S5_248V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162204924|gb|FC380606.1|FC380606
EST:     TTGGAGCGTCGACGACAATACCGTTGTATTTGTGGCGGATCCCAGCTTAG                         GTAACATTTTAAACTTCAACGTGGGAGCTGGTGTGGATCTCAGCATTCCTC
genomic: TTGGAGCGTCGACGACAATACCGTTGTATTTGTGGCGGATCCCAGCTTAGgtatctaata ... ctgaatatagGTAACATTTTAAACTTCAACGTGGGAGCTGGTGTGGATCTCAGCATTCCTC
EST: gi|162229579|gb|FC404860.1|FC404860
EST:     TTGGAGCGTCGACGACAATACCGTTGTATTTGTGGCGGATCCCAGCTTAG                         GTAACATTTTAAACTTCAACGTGGGAGCTGGTGTGGATCTCAGCATTCCTC
genomic: TTGGAGCGTCGACGACAATACCGTTGTATTTGTGGCGGATCCCAGCTTAGgtatctaata ... ctgaatatagGTAACATTTTAAACTTCAACGTGGGAGCTGGTGTGGATCTCAGCATTCCTC
EST: gi|67696673|gb|BJ956906.1|BJ956906
EST:     TTGGAGCGTCGACGACAATACCGTTGTATTTGTGGCGGATCCCAGCTTAG                         GTAACATTTTAAACTTCAACGTGGGAGCTGGTGTGGATCTCAGCATTCCTC
genomic: TTGGAGCGTCGACGACAATACCGTTGTATTTGTGGCGGATCCCAGCTTAGgtatctaata ... ctgaatatagGTAACATTTTAAACTTCAACGTGGGAGCTGGTGTGGATCTCAGCATTCCTC
EST: gi|162229580|gb|FC404861.1|FC404861
EST:     TTGGAGCGTCGACGACAATACCGTTGTATTTGTGGCGGATCCCAGCTTAN                         GTAACATTTTAAACTTNCA-CGTGNGAGCTGGTGTGGATCTCAGCATTCCT
genomic: TTGGAGCGTCGACGACAATACCGTTGTATTTGTGGCGGATCCCAGCTTAGgtatctaata ... ctgaatatagGTAACATTTTAAACTT-CAACGTGGGAGCTGGTGTGGATCTCAGCATTCCT
EST: gi|22492592|gb|BU052515.1|BU052515
EST:     TTGGAGCGTCGACGACAATACCGTTGTATTTGTGGCGGATCCCAGCTTAG                         GTAACATTTTAAACTTCAACGTGGGAGCTGGTGTGGATCTCAGCATTCCTC
genomic: TTGGAGCGTCGACGACAATACCGTTGTATTTGTGGCGGATCCCAGCTTAGgtatctaata ... ctgaatatagGTAACATTTTAAACTTCAACGTGGGAGCTGGTGTGGATCTCAGCATTCCTC
EST: gi|162224698|gb|FC401946.1|FC401946
EST:     TTGGAGCGTCGACGACAATACCGTTGTATTTGTGGCGGATCCCAGCTTAG                         GTAACATTTTAAACTTCAACGTGGGAGCTGGTGTGGATCTCAGCATTCCTC
genomic: TTGGAGCGTCGACGACAATACCGTTGTATTTGTGGCGGATCCCAGCTTAGgtatctaata ... ctgaatatagGTAACATTTTAAACTTCAACGTGGGAGCTGGTGTGGATCTCAGCATTCCTC
EST: gi|162204923|gb|FC380605.1|FC380605
EST:     TTGGAGCGTCGACGACAATACCGTTGTATTTGTGGCGGATCCCAGCTTAG                         GTAACATTTTAAACTTCAACGTGGGAGCTGGTGTGGATCTCAGCATTCCTC
genomic: TTGGAGCGTCGACGACAATACCGTTGTATTTGTGGCGGATCCCAGCTTAGgtatctaata ... ctgaatatagGTAACATTTTAAACTTCAACGTGGGAGCTGGTGTGGATCTCAGCATTCCTC
EST: gi|162224697|gb|FC401945.1|FC401945
EST:     TTGGAGCGTCGACGACAATACCGTTGTATTTGTGGCGGATCCCAGCTTAG                         GTAACATTTTAAACTTCAACGTGGGAGCTGGTGTGGATCTCAGCATTCCTC
genomic: TTGGAGCGTCGACGACAATACCGTTGTATTTGTGGCGGATCCCAGCTTAGgtatctaata ... ctgaatatagGTAACATTTTAAACTTCAACGTGGGAGCTGGTGTGGATCTCAGCATTCCTC
EST: gi|67579413|gb|BJ951534.1|BJ951534
EST:     GACAATACCGTTGTATTTGTGGCGGATCCCAGCTTAG                         GTAACATTTTAAACTTCAACGTGGGAGCTGGTGTGGATCTCAGCATTCCTC
genomic: GACAATACCGTTGTATTTGTGGCGGATCCCAGCTTAGgtatctaata ... ctgaatatagGTAACATTTTAAACTTCAACGTGGGAGCTGGTGTGGATCTCAGCATTCCTC
EST: gi|67701119|gb|BJ961352.1|BJ961352
EST:     TTGGAGCGTCGACGACAATACCGTTGTATTTGTGGCGGATCCCAGCTTAG                         GTAACATTTTAAACTTCAACGTGGGAGCTGGTGTGGATCTCAGCATTCCTC
genomic: TTGGAGCGTCGACGACAATACCGTTGTATTTGTGGCGGATCCCAGCTTAGgtatctaata ... ctgaatatagGTAACATTTTAAACTTCAACGTGGGAGCTGGTGTGGATCTCAGCATTCCTC
EST: gi|67692877|gb|BJ953110.1|BJ953110
EST:     TTGGAGCGTCGACGACAATACCGTTGTATTTGTGGCGGATCCCAGCTTAG                         GTAACATTTTAAACTTCAACGTGGGAGCTGGTGTGGATCTCAGCATTCCTC
genomic: TTGGAGCGTCGACGACAATACCGTTGTATTTGTGGCGGATCCCAGCTTAGgtatctaata ... ctgaatatagGTAACATTTTAAACTTCAACGTGGGAGCTGGTGTGGATCTCAGCATTCCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctctagtgtcgatttatctgacaaagaatctgttttctgttgtctgaatatagGTAACATTTTAAACTTCAACGTGGGAGCTGGTGTGGATCTCAGCATTCCTCGAAGCTTTTGGACACGATTAGCAGGGAAATATGGCAACAAATTTTACTG
                 atctgac  putative branch site (score: 3)
             atttatct  TA-rich tract