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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggggcatctttatttgatttacgcttctgttggaagtttgttgattggaactcacatggttcgattgtttggaatcgatctcacttcttgtttttctgccatgtctttttattgactggttgtgctctgttgtgcatgcactttgtaactgaatgaatgtgtgtgtcttgatctgcagAATTTTATTGGTCTATCTATTGCAGACGGTTATATTGCTTGTGGATCAGAAACAAATGCG

Basic information

species Physcomitrella patens
transcript PP1S59_66V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100439737|gb|BY962082.1|BY962082
EST:     ATGCCCAGACTGGTTGTTCGCTCACGTATACTGGACATACTAATGAAAAG                         AATTTTATTGGTCTATCTATTGCAGACGGTTATATTGCTTGTGGATCAGAA
genomic: ATGCCCAGACTGGTTGTTCGCTCACGTATACTGGACATACTAATGAAAAGgtaggggcat ... tgatctgcagAATTTTATTGGTCTATCTATTGCAGACGGTTATATTGCTTGTGGATCAGAA
EST: gi|162171373|gb|FC346453.1|FC346453
EST:     ATGCCCAGACTGGTTGTTCGCTCACGTATACTGGACATACTAATGAAAAG                         AAATTTATTGGTCTATCTAT
genomic: ATGCCCAGACTGGTTGTTCGCTCACGTATACTGGACATACTAATGAAAAGgtaggggcat ... tgatctgcagAATTTTATTGGTCTATCTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctctgttgtgcatgcactttgtaactgaatgaatgtgtgtgtcttgatctgcagAATTTTATTGGTCTATCTATTGCAGACGGTTATATTGCTTGTGGATCAGAAACAAATGCG
                  tttgtaa  TA-rich tract