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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attacgtacgtacctggtgaagttgatgacgtgcgaatttgcatcacgtgataaatctgaacgtacggttatgattattatatttgggtgaaatttgcagCTGGTATTGTTATTGAATCAAGGAACTGGCCACCCCTAGTTCCTATTCTCCATCATGACATCGCCAATGACATCCCAGAACACGTCCGGGGGTTAATGTA

Basic information

species Physcomitrella patens
transcript PP1S58_245V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208374144|gb|DC945190.1|DC945190
EST:     AAGAACTGAAACGCAGAGAGGATGCTGCTTC-ATAG                         C-NGTATTGTTA-TGAATCCAGGAACTGGCCACCCCTAGTTCCTATTCTCC
genomic: AAGAACTGAAACGCAGAGAGGATGCTGCTTCAATAGgtactgatga ... aaatttgcagCTGGTATTGTTATTGAATCAAGGAACTGGCCACCCCTAGTTCCTATTCTCC
EST: gi|67720746|gb|BJ971005.1|BJ971005
EST:     TGCTTCAATAG                         CTGGTATTGTTATTGAATCAAGGAACTGGCCACCCCTAGTTCCTATTCTCC
genomic: TGCTTCAATAGgtactgatga ... aaatttgcagCTGGTATTGTTATTGAATCAAGGAACTGGCCACCCCTAGTTCCTATTCTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgtgataaatctgaacgtacggttatgattattatatttgggtgaaatttgcagCTGGTATTGTTATTGAATCAAGGAACTGGCCACCCCTAGTTCCTATTCTCCATCATGACATCGCCAATGACATCCCAGAACACGTCCGGGGGTTAATGTA
                       ttatgattattatatt  TA-rich tract