1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tatcatgttacagtgagagtgcgcttgatgtttgctgtgcagtgttgcttctaagctcctttgttgtctgcctgtttactactgcctcttttgtatgcagGGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGGCCGATCACCAGCAGTAGCAGGAGTTCCAGCCGCAACCCCTGCTGCTCCAGCTCAAGCAGCTC
species | Physcomitrella patens |
transcript | PP1S58_148V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCT GGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGGCCGATCACCAGCAEST: gi|67709974|gb|BJ965790.1|BJ965790
genomic: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCTgtaagtgcac ... ttgtatgcagGGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGGCCGATCACCAGCA
EST: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCT GGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGEST: gi|162275529|gb|FC451284.1|FC451284
genomic: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCTgtaagtgcac ... ttgtatgcagGGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGG
EST: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCT GGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGGCCGATCACCAGCAEST: gi|208374139|gb|DC952570.1|DC952570
genomic: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCTgtaagtgcac ... ttgtatgcagGGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGGCCGATCACCAGCA
EST: GCGAGCTGTGGAGTACTTATATTCT GGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGGCCGATCACCAGCAEST: gi|100353954|gb|BY983394.1|BY983394
genomic: GCGAGCTGTGGAGTACTTATATTCTgtaagtgcac ... ttgtatgcagGGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGGCCGATCACCAGCA
EST: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCT GGTATCCCGGAATCAGCTGAGAEST: gi|100384304|gb|BY969435.1|BY969435
genomic: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCTgtaagtgcac ... ttgtatgcagGGTATCCCGGAATCAGCTGAGA
EST: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCT GGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGGGCCGATCACCAGCEST: gi|100386503|gb|BY951299.1|BY951299
genomic: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCTgtaagtgcac ... ttgtatgcagGGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGG-CCGATCACCAGC
EST: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCT GGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGGCCGATCACCAGCAEST: gi|162260011|gb|FC435314.1|FC435314
genomic: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCTgtaagtgcac ... ttgtatgcagGGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGGCCGATCACCAGCA
EST: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCT GGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGGCCGATCACCAGCAEST: gi|100361737|gb|BY947797.1|BY947797
genomic: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCTgtaagtgcac ... ttgtatgcagGGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGGCCGATCACCAGCA
EST: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCT GGTATCCCGGAATCAGCTGAGATGCGACCTGGTGGGGGCCGATCACCAGCAEST: gi|162163441|gb|FC339975.1|FC339975
genomic: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCTgtaagtgcac ... ttgtatgcagGGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGGCCGATCACCAGCA
EST: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCT GGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGGCCGATCACCAGCA
genomic: TACGTGCTGCATTCAACAATCCCGAGCGAGCTGTGGAGTACTTATATTCTgtaagtgcac ... ttgtatgcagGGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGGCCGATCACCAGCA
tgcttctaagctcctttgttgtctgcctgtttactactgcctcttttgtatgcagGGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGGCCGATCACCAGCAGTAGCAGGAGTTCCAGCCGCAACCCCTGCTGCTCCAGCTCAAGCAGCTC
ctactgcctctttt CT-rich tract
ttttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatcatgttacagtgagagtgcgcttgatgtttgctgtgcagtgttgcttctaagctcctttgttgtctgcctgtttactactgcctcttttgtatgcagGGTATCCCGGAATCAGCTGAGATGCGACCTGTTGGGGGCCGATCACCAGCAGTAGCAGGAGTTCCAGCCGCAACCCCTGCTGCTCCAGCTCAAGCAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC