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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtcatctcacaaaacttgttattatgtaatcatagtttccttctgtctgaagtgttcttccgctctcatcctttttcatgtttttcattgtattgtgcagACAATCTCTCAGGCACTCGCAACAGCGAAAGAGCACTTTGCAAGATCACTGCTCAAGTAAAACATTGGGCGTAGAATGTTCATGACGAAGTAGTAGAGAA

Basic information

species Physcomitrella patens
transcript PP1S56_263V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162214884|gb|FC391019.1|FC391019
EST:     GCAGAGTGGCGATGCGGGGTGCTAATGATGACGTACCCCTATCAGAGCAG                         ACAATCTCTCAGGCACTCGCAACAGCGAAAGAGCACTTTGCAAGATCACTG
genomic: GCAGAGTGGCGATGCGGGGTGCTAATGATGACGTACCCCTATCAGAGCAGgtattcttgg ... tattgtgcagACAATCTCTCAGGCACTCGCAACAGCGAAAGAGCACTTTGCAAGATCACTG
EST: gi|67508098|gb|BJ940969.1|BJ940969
EST:     GCAGAGTGGCGATGCGGGGTGCTAATGATGACGTACCCCTATCAGAGCAG                         ACAATCTCTCAGGCACTCGCAACAGCGAAAGAGCACTTTGCAAGATCACTG
genomic: GCAGAGTGGCGATGCGGGGTGCTAATGATGACGTACCCCTATCAGAGCAGgtattcttgg ... tattgtgcagACAATCTCTCAGGCACTCGCAACAGCGAAAGAGCACTTTGCAAGATCACTG
EST: gi|162214885|gb|FC391020.1|FC391020
EST:     GCAGAGTGGCGATGCGGGGTGCTAATGATGACGTACCCCTATCAGAGCAG                         ACAATCTCTCAGGCACTCGCAACAGCGAAAGAGCACTTTGCAAGATCACTG
genomic: GCAGAGTGGCGATGCGGGGTGCTAATGATGACGTACCCCTATCAGAGCAGgtattcttgg ... tattgtgcagACAATCTCTCAGGCACTCGCAACAGCGAAAGAGCACTTTGCAAGATCACTG
EST: gi|37853329|gb|BJ611337.1|BJ611337
EST:     GCAGAGTGGCGATGCGGGGTGCTAATGATGACGTACCCCTATCAGAGCAG                         ACAATCTCTCAGGCACTCGCAACAGCGAAAGAGCACTTTGCAAGATCACTG
genomic: GCAGAGTGGCGATGCGGGGTGCTAATGATGACGTACCCCTATCAGAGCAGgtattcttgg ... tattgtgcagACAATCTCTCAGGCACTCGCAACAGCGAAAGAGCACTTTGCAAGATCACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgaagtgttcttccgctctcatcctttttcatgtttttcattgtattgtgcagACAATCTCTCAGGCACTCGCAACAGCGAAAGAGCACTTTGCAAGATCACTGCTCAAGTAAAACATTGGGCGTAGAATGTTCATGACGAAGTAGTAGAGAA
                          tttttcatgttttt  TA-rich tract