1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atgcagcatgaaatacttggtcaatatggcacctagtgaagggaaggttaagtggatttgctaccccttatctgagtattttattcaaattgtcctacagGGTCAGCTTATGGAGAAGTTCAGCGAAGATACAGATGGCACAGCCTCTCGGCTTGACGTAGTCCAG
species | Physcomitrella patens |
transcript | PP1S55_214V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTCATGTTGGCCACGTAGGCGTTAGTATACACGAAGAATTGTCATTACAG GGTCAGCTTATGGAGAAGTTCAGCGAAGATACAGATGGCACAGCCTCTCGGEST: gi|162214505|gb|FC391472.1|FC391472
genomic: CTCATGTTGGCCACGTAGGCGTTAGTATACACGAAGAATTGTCATTACAGgtacatcctt ... tgtcctacagGGTCAGCTTATGGAGAAGTTCAGCGAAGATACAGATGGCACAGCCTCTCGG
EST: CTCATGTTGGCCACGTAGGCGTTAGTATACACGAAGAATTGTCATTACAG GGTCAGCTTATGGAGAAGTTCAGCGAAGATACAGATGGCACAGCCTCTCGGEST: gi|208378885|gb|DC927587.1|DC927587
genomic: CTCATGTTGGCCACGTAGGCGTTAGTATACACGAAGAATTGTCATTACAGgtacatcctt ... tgtcctacagGGTCAGCTTATGGAGAAGTTCAGCGAAGATACAGATGGCACAGCCTCTCGG
EST: CTCATGTTGGCCACGTAGGCGTTAGTATACACGAAGAATTGTCATTACAG GGTCAGCTTATGGAGAAGTTCAGCGAAGATACAGATGGCACAGCCTCTCGGEST: gi|208388648|gb|DC941489.1|DC941489
genomic: CTCATGTTGGCCACGTAGGCGTTAGTATACACGAAGAATTGTCATTACAGgtacatcctt ... tgtcctacagGGTCAGCTTATGGAGAAGTTCAGCGAAGATACAGATGGCACAGCCTCTCGG
EST: CTCATGTTGGCCACGTAGGCGTTAGTATACACGAAGAATTGTCATTACAG GGTCAGCTTATGGAGAAGTTCAGCGAAAATACAGATGGCACAGCCTCTCGG
genomic: CTCATGTTGGCCACGTAGGCGTTAGTATACACGAAGAATTGTCATTACAGgtacatcctt ... tgtcctacagGGTCAGCTTATGGAGAAGTTCAGCGAAGATACAGATGGCACAGCCTCTCGG
ggttaagtggatttgctaccccttatctgagtattttattcaaattgtcctacagGGTCAGCTTATGGAGAAGTTCAGCGAAGATACAGATGGCACAGCCTCTCGGCTTGACGTAGTCCAG
ttgtcct CT-rich tract
agtattttattcaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcagcatgaaatacttggtcaatatggcacctagtgaagggaaggttaagtggatttgctaccccttatctgagtattttattcaaattgtcctacagGGTCAGCTTATGGAGAAGTTCAGCGAAGATACAGATGGCACAGCCTCTCGGCTTGACGTAGTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
-tgcagca