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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcttccgttctcagtagcattcaacttggtgcaatctgtgtatcccgtgtatcattttttgctgtgcaggacatgatggtcttcagttttacaaatgattatgaactacatctgacttctgccattctgtctgcagCATTCGTATTGTCTATCTCTGCTCGCTGATTATTTGAAGCCTGGAAGCATTGTCCTCGACGTAGGTTCTGGCTCTGGTTATCTCACTGCTGTCTTCGGCC

Basic information

species Physcomitrella patens
transcript PP1S55_159V6.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162179521|gb|FC356561.1|FC356561
EST:     GTTATGGAGCAACAATTTCTGCGCCACACATG                         CATTCGTATTGTCTATCTCTGCTCGCTGATTATTTGAAGCCTGGAAGCATT
genomic: GTTATGGAGCAACAATTTCTGCGCCACACATGgttagcttcc ... ctgtctgcagCATTCGTATTGTCTATCTCTGCTCGCTGATTATTTGAAGCCTGGAAGCATT
EST: gi|208393114|gb|DC929609.1|DC929609
EST:     GTTATGGAGCAACAATTTCTGCGCCACACATG                         CATTCGTATTGTCTATCTCTGCTCGCTGATTATTTGAAGCCTGGAAGCATT
genomic: GTTATGGAGCAACAATTTCTGCGCCACACATGgttagcttcc ... ctgtctgcagCATTCGTATTGTCTATCTCTGCTCGCTGATTATTTGAAGCCTGGAAGCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcagttttacaaatgattatgaactacatctgacttctgccattctgtctgcagCATTCGTATTGTCTATCTCTGCTCGCTGATTATTTGAAGCCTGGAAGCATTGTCCTCGACGTAGGTTCTGGCTCTGGTTATCTCACTGCTGTCTTCGGCC
                            atctgac  putative branch site (score: 3)
                                           ttctgtct  putative PPT
     ttttacaaatgattat  TA-rich tract