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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcttgtgcaaaccaatcccagatgagttcccgtcccacataaatgatgattgaagtgtggacattttgtgtgtgtgtttgtgcgtgcgtgtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGCAAGACAAACTTAGCTGAGGATCTGAAAGCCCGATGGGAGGATTACGTTA

Basic information

species Physcomitrella patens
transcript PP1S55_140V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162155053|gb|FC330847.1|FC330847
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|208381343|gb|DC919233.1|DC919233
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|162175367|gb|FC352293.1|FC352293
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|162164968|gb|FC342159.1|FC342159
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|18336874|gb|BJ168897.1|BJ168897
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|162198727|gb|FC374834.1|FC374834
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|162190252|gb|FC366410.1|FC366410
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|208370679|gb|DC948244.1|DC948244
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|162239677|gb|FC414112.1|FC414112
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|162185075|gb|FC362209.1|FC362209
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTTTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|162184338|gb|FC359721.1|FC359721
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|162189219|gb|FC366728.1|FC366728
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|18333691|gb|BJ165706.1|BJ165706
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|67721366|gb|BJ971625.1|BJ971625
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|7583577|gb|AW699486.1|AW699486
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|162150551|gb|FC326407.1|FC326407
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|37826066|gb|BJ584078.1|BJ584078
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|162279422|gb|FC455538.1|FC455538
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTTTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|162183536|gb|FC359010.1|FC359010
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|18335579|gb|BJ167599.1|BJ167599
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|162225653|gb|FC401795.1|FC401795
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTTTACGCCGAACCACGAGCAGTTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|162246116|gb|FC423578.1|FC423578
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|162160092|gb|FC335962.1|FC335962
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|15327382|gb|BI488021.1|BI488021
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|162247001|gb|FC423943.1|FC423943
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTTTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|208360573|gb|DC950091.1|DC950091
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|162241624|gb|FC415526.1|FC415526
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|18334764|gb|BJ166781.1|BJ166781
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|162180784|gb|FC358285.1|FC358285
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|162168973|gb|FC345655.1|FC345655
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTTTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|162250823|gb|FC426867.1|FC426867
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|162151427|gb|FC326932.1|FC326932
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|162267916|gb|FC444517.1|FC444517
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|208386256|gb|DC952969.1|DC952969
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|162155302|gb|FC331226.1|FC331226
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|162190930|gb|FC368128.1|FC368128
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTTTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|15729829|gb|BI741509.1|BI741509
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|162225381|gb|FC400873.1|FC400873
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTTTACGCCGAACCACGAGCAGTTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|162173366|gb|FC349537.1|FC349537
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|162181815|gb|FC357414.1|FC357414
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGG
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGG
EST: gi|162164541|gb|FC341836.1|FC341836
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|7583759|gb|AW699664.1|AW699664
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|162240363|gb|FC419101.1|FC419101
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|162218664|gb|FC394630.1|FC394630
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTTTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|162157207|gb|FC332841.1|FC332841
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|208359702|gb|DC946592.1|DC946592
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|162189205|gb|FC366727.1|FC366727
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|162238803|gb|FC415045.1|FC415045
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|7647862|gb|AW738845.1|AW738845
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|162164111|gb|FC340387.1|FC340387
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|18339624|gb|BJ171651.1|BJ171651
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|162161912|gb|FC338495.1|FC338495
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|162241623|gb|FC415525.1|FC415525
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTTTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|162164112|gb|FC340388.1|FC340388
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|162206312|gb|FC382590.1|FC382590
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CATTTTTACGCCGAACCACGAGCAGTTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|15320192|gb|BI487865.1|BI487865
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|162157206|gb|FC332840.1|FC332840
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|7067319|gb|AW497174.1|AW497174
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|208396211|gb|DC924005.1|DC924005
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|162152673|gb|FC328340.1|FC328340
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
EST: gi|7067477|gb|AW497332.1|AW497332
EST:     CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATG                         CACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC
genomic: CCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 32 (downstream exon)
Score: 17

GATGTGCGCGAAAGCAGCCGGAAAGGAAGCCAAAATCGTTCATTACGATCCCAAGGCTATTGGTGTAGATGCCAAGAAGGCTTTCCCATTCCGTAACATGgtatgttacc ... gtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGCAAGACAAACTTAGCTGAGGATCTGAAAGCCCGATGGGAGGATTACGTTA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatgattgaagtgtggacattttgtgtgtgtgtttgtgcgtgcgtgtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGCAAGACAAACTTAGCTGAGGATCTGAAAGCCCGATGGGAGGATTACGTTA
                acatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttcttgtgcaaaccaatcccagatgagttcccgtcccacataaatgatgattgaagtgtggacattttgtgtgtgtgtttgtgcgtgcgtgtctgtgcagCACTTCTACGCCGAACCACGAGCAGCTAAGACGAAACTGGGGTGGGAGAGCAAGACAAACTTAGCTGAGGATCTGAAAGCCCGATGGGAGGATTACGTTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT