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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tccacacgtttgccacattaaacacacttatctatttatttctattatttgatatctccatatatactgattatacgattgttttgtcaatccaaaacagGGTGGATTGGACGACAGGAGCTGTCTTTATAACGCCACCCGGTTGGTGGCACAGCCATCACAACGAGTCGTGTGAGGAAGCATGGGTATTACCCATCCAA

Basic information

species Physcomitrella patens
transcript PP1S55_113V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37825471|gb|BJ583537.1|BJ583537
EST:     CTGATGGGCAAAGAGCTCGATAGCGAGGGATGGGTTAAGGATCCGATCAG                         GGTGGATTGGACGACAGGAGCTGTCTTTATAACGCCACCCGGTTGGTGGCA
genomic: CTGATGGGCAAAGAGCTCGATAGCGAGGGATGGGTTAAGGATCCGATCAGgtttgtatga ... tccaaaacagGGTGGATTGGACGACAGGAGCTGTCTTTATAACGCCACCCGGTTGGTGGCA
EST: gi|162191811|gb|FC367960.1|FC367960
EST:     CTGATGGGCAAAGAGCTCGATAGCGAGGGATGGGTTAAGGATCCGATCAG                         GGTGGATTGGACGACAGGAGCTGTCTTTATAACGCCACCCGGTTGGTGGCA
genomic: CTGATGGGCAAAGAGCTCGATAGCGAGGGATGGGTTAAGGATCCGATCAGgtttgtatga ... tccaaaacagGGTGGATTGGACGACAGGAGCTGTCTTTATAACGCCACCCGGTTGGTGGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttgatatctccatatatactgattatacgattgttttgtcaatccaaaacagGGTGGATTGGACGACAGGAGCTGTCTTTATAACGCCACCCGGTTGGTGGCACAGCCATCACAACGAGTCGTGTGAGGAAGCATGGGTATTACCCATCCAA
                   tactgat  putative branch site (score: 2)
              atatatactgattata  TA-rich tract