1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ggatttatgtatcgggcatgactatggtgcaagatgtaatcttgttgttcggaccattgactgatatagtaataggttgtataacatgtgccactttcagCTCAGATTATGTGGAACTTGAAGCAGTCCCTACAACAGTTAACTTGGAAGGTCCATTGGAGCGGGGCCCTATCGCTTCCTCAGGGATGCTCGAGATGCAG
species | Physcomitrella patens |
transcript | PP1S54_95V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATCTTGCACGCCTTTAAACCTCCTCCGAAACCACGGCTGATTCCCCCAAG CTCANATTATGTGGAACTTGAAGCAGTCCCTACAACAGTTAACTTGGAAGGEST: gi|100445401|gb|BY983030.1|BY983030
genomic: ATCTTGCACGCCTTTAAACCTCCTCCGAAACCACGGCTGATTCCCCCAAGgtctgtttac ... ccactttcagCTCAGATTATGTGGAACTTGAAGCAGTCCCTACAACAGTTAACTTGGAAGG
EST: ATCTTGCACGCCTTTAAACCTCCTCCGAAACCACGGCTGATTCCCCCAAG CTCAGATTATGTGGAACTTGAAGCAGTCCCTACAACAGTTAACTTGGAAGGEST: gi|208352362|gb|DC902007.1|DC902007
genomic: ATCTTGCACGCCTTTAAACCTCCTCCGAAACCACGGCTGATTCCCCCAAGgtctgtttac ... ccactttcagCTCAGATTATGTGGAACTTGAAGCAGTCCCTACAACAGTTAACTTGGAAGG
EST: ATCTTGCACGCCTTTAAACCTCCTCCGAAACCACGGCTGATTCCCCCAAG CTCANATTATGTGGAACTTGAAGCAGTCCCTACAACAGTTAACTTGGAAGGEST: gi|208390427|gb|DC933684.1|DC933684
genomic: ATCTTGCACGCCTTTAAACCTCCTCCGAAACCACGGCTGATTCCCCCAAGgtctgtttac ... ccactttcagCTCAGATTATGTGGAACTTGAAGCAGTCCCTACAACAGTTAACTTGGAAGG
EST: ATCTTGCACGCCTTTAAACCTCCTCCGAAACCACGGCTGATTCCCCCAAG CTCAGATTATGTGGAACTTGAAGCAGTCCCTACAACAGTTAACTTGGAAGGEST: gi|100389800|gb|BY971152.1|BY971152
genomic: ATCTTGCACGCCTTTAAACCTCCTCCGAAACCACGGCTGATTCCCCCAAGgtctgtttac ... ccactttcagCTCAGATTATGTGGAACTTGAAGCAGTCCCTACAACAGTTAACTTGGAAGG
EST: ATCTTGCACGCCTTTAAACCTCCTCCGAAACCACGGCTGATTCCCCCAAG CTCAGATTATGTGGAACTTGAAGCAGTCCCTACNACAGTTAACTTGGAAGGEST: gi|100412769|gb|BY974898.1|BY974898
genomic: ATCTTGCACGCCTTTAAACCTCCTCCGAAACCACGGCTGATTCCCCCAAGgtctgtttac ... ccactttcagCTCAGATTATGTGGAACTTGAAGCAGTCCCTACAACAGTTAACTTGGAAGG
EST: TCTTGCACGCCTTTTAACCTCCTNNCGAAAC-ACG-CTGATTCCCCCNAG CTCAGATTATGTGGAACTGGAAGCAGTCCCTACAACAGTTAACTTG
genomic: TCTTGCACGCCTTTAAACCTCCTC-CGAAACCACGGCTGATTCCCCCAAGgtctgtttac ... ccactttcagCTCAGATTATGTGGAACTTGAAGCAGTCCCTACAACAGTTAACTTG
tgttcggaccattgactgatatagtaataggttgtataacatgtgccactttcagCTCAGATTATGTGGAACTTGAAGCAGTCCCTACAACAGTTAACTTGGAAGGTCCATTGGAGCGGGGCCCTATCGCTTCCTCAGGGATGCTCGAGATGCAG
gtataac putative branch site (score: 36)
ccactttc putative PPT
atatagtaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggatttatgtatcgggcatgactatggtgcaagatgtaatcttgttgttcggaccattgactgatatagtaataggttgtataacatgtgccactttcagCTCAGATTATGTGGAACTTGAAGCAGTCCCTACAACAGTTAACTTGGAAGGTCCATTGGAGCGGGGCCCTATCGCTTCCTCAGGGATGCTCGAGATGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - tggtgca