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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtaccttctctactggaccaactttcttggtaaaacgtctttcctgtcagttgctgcttctgaataagatctgaccattctgatatgggatatgtgcagGTTGTCCGTGTCATACCTTACAGTGCGGTGCAACTTTTTGCTTATGAGGTTTACAAG

Basic information

species Physcomitrella patens
transcript PP1S52_69V6.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S52_69V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: LOC_Os01g16040.1 (Oryza sativa), 3'ss of exon 3
agtaccttctctactggaccaactttcttggtaaaacgtctttcctgtcagttgctgcttctgaataagatctgacc--attctgatatgggatatgtgcagGTTGTCCGTGTCATACCTTACAGTGCGGTGCAACTTTTTGCTTATGAGGTTTACAAG
 || | |  | | |   | ||      ||| |    | |   |  | | | ||  | ||  ||     | ||| ||    ||    |||    ||  |  ||||| ||||  |  | |||||||||||||||||||| ||| ||||||| |||||||||
-gtgcttgatattccccatcatgcagattg-tggctcatgcatggt-ttattttattctgttggtcctgttctcacttagtttctttataaactactta-agGTTATCCGCATAGTTCCTTACAGTGCGGTGCAACTGTTTTCTTATGAAGTTTACAAG

upper sequence: PP1S52_69V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: GLYMA18G42950.1 (Glycine max), 3'ss of exon 4
------------agtaccttctctactggaccaactttcttggtaaaacgtctttcctgtcagttgctgcttctgaataagatctgaccattctgatatgggatatgtgcagGTTGTCCGTGTCATACCTTACAGTGCGGTGCAACTTTTTGCTTATGAGGTTTACAAG
            || |     | || |||     || | ||  ||   | |  |      | ||   | | | ||  | || | |  |   | | ||||        | |||||  |||||||  ||||||||||||| || || ||||||||||||||| |||| |||
gtctgtacaataaggaaagaatgtattggtatttctctatttatatctcataatattgaccggtcttttcatttgtgttag-tgtttcttctttaatat--------tccagGTGATCCGTGTTGTACCTTACAGTGCTGTCCAGCTTTTTGCTTATGAGATTTATAAG

upper sequence: PP1S52_69V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: GLYMA03G08120.1 (Glycine max), 3'ss of exon 3
-------------------agtaccttctctactggaccaactttcttggtaaaacgtctttcc-tgtcagttgctgcttctgaataagatctgaccattctgatatgggatatgtgcagGTTGTCCGTGTCATACCTTACAGTGCGGTGCAACTTTTTGCTTATGAGGTTTACAAG
                   | |   ||    | |||     || | |   || | | |||||   |||   ||  || || | | |    | | |   ||   |  |   || | | |||||  | || || |||||||||||||| || || ||||||||||||||  ||||||||
gtctctataattaggaacaaatttattggtaattggtatttctgtatgtatatatcttctttttatgttgattagtgtttttcatttg--ttttagtgtttctacttttaatgt-tccagGTGATTCGGGTTATACCTTACAGTGCTGTCCAGCTTTTTGCTTATGAAATTTACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcagttgctgcttctgaataagatctgaccattctgatatgggatatgtgcagGTTGTCCGTGTCATACCTTACAGTGCGGTGCAACTTTTTGCTTATGAGGTTTACAAG
                                 ttctgat  putative branch site (score: 3)
                  aataagat  TA-rich tract