1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgcttccaaactctatctttgaacatgttgcccgcctcgattgctgaattgcacatcatgtatgttgagatgtccacttacgaatcagtggggtgtggagtacagATGGATAGAGCCTCCATATTGGGGGATGCGATTGAGTACCTAAAGGAGCTCCTGCAACGCATCAATGAAATCCATAACGAACTGGAAGCAGCAAAGCTGG
species | Physcomitrella patens |
transcript | PP1S51_178V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTCCTAAGATTACAAAG ATGGATAGAGCCTCCATATTGGGGGATGCGATTGAGTACCTAAAGGAGCTCEST: gi|208372882|gb|DC956283.1|DC956283
genomic: GTTCCTAAGATTACAAAGgtgcttccaa ... tggagtacagATGGATAGAGCCTCCATATTGGGGGATGCGATTGAGTACCTAAAGGAGCTC
EST: TCAACGATCGCCTGTACACGCTACGGTCTGTAGTTCCTAAGATTACAAAG ATGGATAGAGCCTCCATATTGGGGGATGCGATTGAGTACCTAAAGGAGCTCEST: gi|162186811|gb|FC363055.1|FC363055
genomic: TCAACGATCGCCTGTACACGCTACGGTCTGTAGTTCCTAAGATTACAAAGgtgcttccaa ... tggagtacagATGGATAGAGCCTCCATATTGGGGGATGCGATTGAGTACCTAAAGGAGCTC
EST: TCAACGATCGCCTGTACACGCTACGGTCTGTAGTTCCTAAGATTACAAAG ATGGATAGAGCCTCCATATTGGGGGATGCGATTGAGTACCTAAAGGAGCTCEST: gi|162170260|gb|FC347380.1|FC347380
genomic: TCAACGATCGCCTGTACACGCTACGGTCTGTAGTTCCTAAGATTACAAAGgtgcttccaa ... tggagtacagATGGATAGAGCCTCCATATTGGGGGATGCGATTGAGTACCTAAAGGAGCTC
EST: TCAACGATCGCCTGTACACGCTACGGTCTGTAGTTCCTAAGATTACAAAG ATGGATAGAGCCTCCATATTGGGGGATGCGATTGAGTACCTAAAGGAGCTCEST: gi|162175654|gb|FC351241.1|FC351241
genomic: TCAACGATCGCCTGTACACGCTACGGTCTGTAGTTCCTAAGATTACAAAGgtgcttccaa ... tggagtacagATGGATAGAGCCTCCATATTGGGGGATGCGATTGAGTACCTAAAGGAGCTC
EST: GTTCCTAAGATTACAAAG ATGGATAGAGCCTCCATATTGGGGGATGCGATTGAGTACCTAAAGGAGCTCEST: gi|162204879|gb|FC381197.1|FC381197
genomic: GTTCCTAAGATTACAAAGgtgcttccaa ... tggagtacagATGGATAGAGCCTCCATATTGGGGGATGCGATTGAGTACCTAAAGGAGCTC
EST: TCAACGATCGCCTGTACACGCTACGGTCTGTAGTTCCTAAGATTACAAAG ATGGATAGAGCCTCCATATTGGGGGATGCGATTGAGTACCTAAAGGAGCTCEST: gi|162201437|gb|FC377163.1|FC377163
genomic: TCAACGATCGCCTGTACACGCTACGGTCTGTAGTTCCTAAGATTACAAAGgtgcttccaa ... tggagtacagATGGATAGAGCCTCCATATTGGGGGATGCGATTGAGTACCTAAAGGAGCTC
EST: TCAACGATCGCCTGTACACGCTACGGTCTGTAGTTCCTAAGATTACAAAG ATGGATAGAGCCTCCATATTGGGGGATGCGATTGAGTACCTAAAGGAGCTC
genomic: TCAACGATCGCCTGTACACGCTACGGTCTGTAGTTCCTAAGATTACAAAGgtgcttccaa ... tggagtacagATGGATAGAGCCTCCATATTGGGGGATGCGATTGAGTACCTAAAGGAGCTC
gcacatcatgtatgttgagatgtccacttacgaatcagtggggtgtggagtacagATGGATAGAGCCTCCATATTGGGGGATGCGATTGAGTACCTAAAGGAGCTCCTGCAACGCATCAATGAAATCCATAACGAACTGGAAGCAGCAAAGCTGG
cacttac putative branch site (score: 9)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcttccaaactctatctttgaacatgttgcccgcctcgattgctgaattgcacatcatgtatgttgagatgtccacttacgaatcagtggggtgtggagtacagATGGATAGAGCCTCCATATTGGGGGATGCGATTGAGTACCTAAAGGAGCTCCTGCAACGCATCAATGAAATCCATAACGAACTGGAAGCAGCAAAGCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG