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gtatactttccttcacgtcacaaaatatggtgctttcctttttgaagcgcatgtgagagtgcacgtgattatttggggcttcaactcgttgtttttaagatagggtttctgttcaaccatgtagttcatttatgaagttgccttttgagcttgaatcgtagcacaatgtgctaatcctacagtcttctgatcagGATGTGACTGACATACTTCTGGCCGCTGGAGTAGCGAAGGAAAAAATTCTTCTAAATTTTTGAGGAGATTTTCGTTCAGTG
species | Physcomitrella patens |
transcript | PP1S4_215V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGGGTCGCAAACTGGTGCGGTGTTGTGTGGGCACAAACAAATGGCACTG GATGTGACTGACATACTTCTGGCCGCTGGAGTAGCGAAGGAAAAAATTCTTEST: gi|162264332|gb|FC440498.1|FC440498
genomic: TTGGGTCGCAAACTGGTGCGGTGTTGTGTGGGCACAAACAAATGGCACTGgtatactttc ... ttctgatcagGATGTGACTGACATACTTCTGGCCGCTGGAGTAGCGAAGGAAAAAATTCTT
EST: TTGGGTCGCAAACTGGTGCGGTGTTGTGTGGGCACAAACAAATGGCACTG GATGTGACTGACATACTTCTGGCCGCTGGAGTAGCGAAGGAAAAAATTCTTEST: gi|18333863|gb|BJ165879.1|BJ165879
genomic: TTGGGTCGCAAACTGGTGCGGTGTTGTGTGGGCACAAACAAATGGCACTGgtatactttc ... ttctgatcagGATGTGACTGACATACTTCTGGCCGCTGGAGTAGCGAAGGAAAAAATTCTT
EST: TTGGGTCGCAAACTGGTGCGGTGTTGTGTGGGCACAAACAAATGGCACTG GATGTGACTGACATACTTCTGGCCGCTGGAGTAGCGAAGGAAAAAATTCTTEST: gi|18332708|gb|BJ164721.1|BJ164721
genomic: TTGGGTCGCAAACTGGTGCGGTGTTGTGTGGGCACAAACAAATGGCACTGgtatactttc ... ttctgatcagGATGTGACTGACATACTTCTGGCCGCTGGAGTAGCGAAGGAAAAAATTCTT
EST: TTGGGTCGCAAACTGGTGCGGTGTTGTGTGGGCACAAACAAATGGCACTG GATGTGACTGACATACTTCTGGCCGCTGGAGTAGCGAAGGAAAAAATTCTTEST: gi|19789046|gb|BQ041060.1|BQ041060
genomic: TTGGGTCGCAAACTGGTGCGGTGTTGTGTGGGCACAAACAAATGGCACTGgtatactttc ... ttctgatcagGATGTGACTGACATACTTCTGGCCGCTGGAGTAGCGAAGGAAAAAATTCTT
EST: TTGGGTCGCAAACTGGTGCGGTGTTGTGTGGGCACAAACAAATGGCACTG GATGTGACTGACATACTTCTGGCCGCTGGAGTAGCGAAGGAAAAAATTCTTEST: gi|162245009|gb|FC424967.1|FC424967
genomic: TTGGGTCGCAAACTGGTGCGGTGTTGTGTGGGCACAAACAAATGGCACTGgtatactttc ... ttctgatcagGATGTGACTGACATACTTCTGGCCGCTGGAGTAGCGAAGGAAAAAATTCTT
EST: TTGGGTCGCAAACTGGTGCGGTGTTGTGTGGGCACAAACAAATGGCACTG GATGTGACTGACATACTTCTGGCCGCTGGAGTAGCGAAGGAAAAAATTCTTEST: gi|162238939|gb|FC417703.1|FC417703
genomic: TTGGGTCGCAAACTGGTGCGGTGTTGTGTGGGCACAAACAAATGGCACTGgtatactttc ... ttctgatcagGATGTGACTGACATACTTCTGGCCGCTGGAGTAGCGAAGGAAAAAATTCTT
EST: TTGGGTCGCANACTGGTGCGGTGTTGTGTGGGCACAAACAAATGGCACTG GATGTGACTGACATACTTEST: gi|208371352|gb|DC944516.1|DC944516
genomic: TTGGGTCGCAAACTGGTGCGGTGTTGTGTGGGCACAAACAAATGGCACTGgtatactttc ... ttctgatcagGATGTGACTGACATACTT
EST: TTGGGTCGCAAACTGGTGCGGTGTTGTGTGGGCACAAACAAATGGCACTG GATGTGACTGACATACTTCTGGCCGCTGGAGTAGCGAAGGAAAAAATTCTTEST: gi|6102388|gb|AW126858.1|AW126858
genomic: TTGGGTCGCAAACTGGTGCGGTGTTGTGTGGGCACAAACAAATGGCACTGgtatactttc ... ttctgatcagGATGTGACTGACATACTTCTGGCCGCTGGAGTAGCGAAGGAAAAAATTCTT
EST: TTGGGTCGCAAACTGGTGCGGTGTTGTGTGGGCACAAACAAATGGCACTG GATGTGACTGACATACTTCTGGCCGCTGGAGTAGCGAAGGAAAAAATTCTTEST: gi|162245008|gb|FC424966.1|FC424966
genomic: TTGGGTCGCAAACTGGTGCGGTGTTGTGTGGGCACAAACAAATGGCACTGgtatactttc ... ttctgatcagGATGTGACTGACATACTTCTGGCCGCTGGAGTAGCGAAGGAAAAAATTCTT
EST: TTGGGTCGCAAACTGGTGCGGTGTTGTGTGGGCACAAACAAATGGCACTG GATGTGACTGACATACTTCTGGCCGCTGGAGTAGCGAAGGAAAAAATTCTTEST: gi|67696462|gb|BJ956695.1|BJ956695
genomic: TTGGGTCGCAAACTGGTGCGGTGTTGTGTGGGCACAAACAAATGGCACTGgtatactttc ... ttctgatcagGATGTGACTGACATACTTCTGGCCGCTGGAGTAGCGAAGGAAAAAATTCTT
EST: TTGGGTCGCAAACTGGTGCGGTGTTGTGTGGGCACAAACAAATGGCACTG GATGTGACTGACATACTTCTGGCCGCTGGAGTAGCGAAGGAAAAAATTCTTEST: gi|162238938|gb|FC417702.1|FC417702
genomic: TTGGGTCGCAAACTGGTGCGGTGTTGTGTGGGCACAAACAAATGGCACTGgtatactttc ... ttctgatcagGATGTGACTGACATACTTCTGGCCGCTGGAGTAGCGAAGGAAAAAATTCTT
EST: TTGGGTCGCAAACTGGTGCGGTGTTGTGTGGGCACAAACAAATGGCACTG GATGTGACTGACATACTTCTGGCCGCTGGAGTAGCGAAGGAAAAAATTCTTEST: gi|162179827|gb|FC356418.1|FC356418
genomic: TTGGGTCGCAAACTGGTGCGGTGTTGTGTGGGCACAAACAAATGGCACTGgtatactttc ... ttctgatcagGATGTGACTGACATACTTCTGGCCGCTGGAGTAGCGAAGGAAAAAATTCTT
EST: TTGGGTCGCAAACTGGTGCGGTGTTGTGTGGGCACAAACAAATGGCACTG GATGTGACTGACATACTTCTGGCCGCTGGAGTAGCGAAGGAAAAAATTCTTEST: gi|162264333|gb|FC440499.1|FC440499
genomic: TTGGGTCGCAAACTGGTGCGGTGTTGTGTGGGCACAAACAAATGGCACTGgtatactttc ... ttctgatcagGATGTGACTGACATACTTCTGGCCGCTGGAGTAGCGAAGGAAAAAATTCTT
EST: TTGGGTCGCAAACTGGTGCGGTGTTGTGTGGGCACAAACAAATGGCACTG GATGTGACTGACATACTTCTGGCCGCTGGAGTAGCGAAGGAAAAAATTCTTEST: gi|162235909|gb|FC411652.1|FC411652
genomic: TTGGGTCGCAAACTGGTGCGGTGTTGTGTGGGCACAAACAAATGGCACTGgtatactttc ... ttctgatcagGATGTGACTGACATACTTCTGGCCGCTGGAGTAGCGAAGGAAAAAATTCTT
EST: TTGGGTCGCAAACTGGTGCGGTGTTGTGTGGGCACAAACAAATGGCACTG GATGTGACTGACATACTTCTGGCCGCTGGAGTAGCGAAGGAAAAAATTCTTEST: gi|162199674|gb|FC375913.1|FC375913
genomic: TTGGGTCGCAAACTGGTGCGGTGTTGTGTGGGCACAAACAAATGGCACTGgtatactttc ... ttctgatcagGATGTGACTGACATACTTCTGGCCGCTGGAGTAGCGAAGGAAAAAATTCTT
EST: TTGGGTCGCAAACTGGTGCGGTGTTGTGTGGGCACAAACAAATGGCACTG GATGTGACTGACATACTTCTGGCCGCTGGAGTAGCGAAGGAAAAAATTCTT
genomic: TTGGGTCGCAAACTGGTGCGGTGTTGTGTGGGCACAAACAAATGGCACTGgtatactttc ... ttctgatcagGATGTGACTGACATACTTCTGGCCGCTGGAGTAGCGAAGGAAAAAATTCTT
gccttttgagcttgaatcgtagcacaatgtgctaatcctacagtcttctgatcagGATGTGACTGACATACTTCTGGCCGCTGGAGTAGCGAAGGAAAAAATTCTTCTAAATTTTTGAGGAGATTTTCGTTCAGTG
tgctaat putative branch site (score: 29)
tcttct putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatactttccttcacgtcacaaaatatggtgctttcctttttgaagcgcatgtgagagtgcacgtgattatttggggcttcaactcgttgtttttaagatagggtttctgttcaaccatgtagttcatttatgaagttgccttttgagcttgaatcgtagcacaatgtgctaatcctacagtcttctgatcagGATGTGACTGACATACTTCTGGCCGCTGGAGTAGCGAAGGAAAAAATTCTTCTAAATTTTTGAGGAGATTTTCGTTCAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT