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gtatgtgatgctatgacttatagtgcttaccagtttgttaggccatttctctacatattgaagtccgactgtccacttaaaacttgagctcttctgggctattggtcctttctgcagaaacttcaacttatgtggattcgacattttcatttgaaacattttgatagggttttatttatttatgtagGTTTGTGTACAAGGACCCATGGGAGAAGGAATATTCTCAGGTATGCCATTAGCACTTTCAGGTACCCGTCCAATGCTGGAGCGCATGGACTGGGGCGAGT
species | Physcomitrella patens |
transcript | PP1S49_285V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCATACGAGAACTTGCGTTCACTTTTGCGAATGATGGAAAACGCGTCAGA GTTTGTGTACAAGGACCCATGGGAGAAGGAATATTCTCAGGTATGCCATTAEST: gi|100388672|gb|BY970820.1|BY970820
genomic: TCATACGAGAACTTGCGTTCACTTTTGCGAATGATGGAAAACGCGTCAGAgtatgtgatg ... atttatgtagGTTTGTGTACAAGGACCCATGGGAGAAGGAATATTCTCAGGTATGCCATTA
EST: TCATACGAGAACTTGCGTTCACTTTTGCGAATGATGGANAACGCGTCAGA GTTTGTGTACAAGGACCCATGGGAGAAGGAATATTCTCAGGTATGCCATTAEST: gi|100392123|gb|BY953205.1|BY953205
genomic: TCATACGAGAACTTGCGTTCACTTTTGCGAATGATGGAAAACGCGTCAGAgtatgtgatg ... atttatgtagGTTTGTGTACAAGGACCCATGGGAGAAGGAATATTCTCAGGTATGCCATTA
EST: TCATACGAGAACTTGCGTTCACTTTTGCGAATGATGGAAAACGCGTCAGA GTTTGTGTACAAGGACCCATGGGAGAAGGAATATTCTCAGGTATGCCATTAEST: gi|208377279|gb|DC932429.1|DC932429
genomic: TCATACGAGAACTTGCGTTCACTTTTGCGAATGATGGAAAACGCGTCAGAgtatgtgatg ... atttatgtagGTTTGTGTACAAGGACCCATGGGAGAAGGAATATTCTCAGGTATGCCATTA
EST: TCATACGAGAACTTGCGTTCACTTTTGCGAATGATGGAAAACGCGTCAGA GTTTGTGTACAAGGACCCATGGGAGAAGGAATATTCTCAGGTATGCCATTAEST: gi|100394360|gb|BY972030.1|BY972030
genomic: TCATACGAGAACTTGCGTTCACTTTTGCGAATGATGGAAAACGCGTCAGAgtatgtgatg ... atttatgtagGTTTGTGTACAAGGACCCATGGGAGAAGGAATATTCTCAGGTATGCCATTA
EST: TCATACGAGAACTTGCGTTCACTTTTGCGAATGATGGAAAACGCGTCAGA GTTTGTGTACAAGGACCCATGGGAGAAGGAATATTCTCAGGTATGCCATTAEST: gi|100416278|gb|BY975313.1|BY975313
genomic: TCATACGAGAACTTGCGTTCACTTTTGCGAATGATGGAAAACGCGTCAGAgtatgtgatg ... atttatgtagGTTTGTGTACAAGGACCCATGGGAGAAGGAATATTCTCAGGTATGCCATTA
EST: TCATACGAGAACTTGCGTTCACTTTTGCGAATGATGGANAACGCGTCAGA GTTTGTGTACAAGGACCCATGGGAGAAGGAATATTCTCAGGTATGCCATTAEST: gi|208384727|gb|DC915274.1|DC915274
genomic: TCATACGAGAACTTGCGTTCACTTTTGCGAATGATGGAAAACGCGTCAGAgtatgtgatg ... atttatgtagGTTTGTGTACAAGGACCCATGGGAGAAGGAATATTCTCAGGTATGCCATTA
EST: TCATACGAGAACTTGCGTTCACTTTTGCGAATGATGGAAAACGCGTCAGA GTTTGTGTACAAGGACCCATGGGAGAAGGAATATTCTCAGGTATGCCATTAEST: gi|162215240|gb|FC390813.1|FC390813
genomic: TCATACGAGAACTTGCGTTCACTTTTGCGAATGATGGAAAACGCGTCAGAgtatgtgatg ... atttatgtagGTTTGTGTACAAGGACCCATGGGAGAAGGAATATTCTCAGGTATGCCATTA
EST: TCATACGAGAACTTGCGTTCACTTTTGCGAATGATGGAAAACGCGTCAGA GTTTGTGTACAAGGACCCATGGGAGAAGGAATATTCTCAGGTATGCCATTAEST: gi|208346693|gb|DC913339.1|DC913339
genomic: TCATACGAGAACTTGCGTTCACTTTTGCGAATGATGGAAAACGCGTCAGAgtatgtgatg ... atttatgtagGTTTGTGTACAAGGACCCATGGGAGAAGGAATATTCTCAGGTATGCCATTA
EST: TCATACGAGAACTTGCGTTCACTTTTGCGAATGATGGAAAACGCGTCAGA GTTTGTGTACAAGGACCCATGGGAGAAGGAATATTCTCAGGTATGCCATTAEST: gi|100408084|gb|BY955901.1|BY955901
genomic: TCATACGAGAACTTGCGTTCACTTTTGCGAATGATGGAAAACGCGTCAGAgtatgtgatg ... atttatgtagGTTTGTGTACAAGGACCCATGGGAGAAGGAATATTCTCAGGTATGCCATTA
EST: CATACGAGAACTTGCGTTCACTTTTGCGAAATGATGGAAA-CGCGTCAGA GTTTGTGTACAAGGACCCATGGGAGAAAGGA-TATTCTCAGGTATGCCATTEST: gi|67569115|gb|BJ941939.1|BJ941939
genomic: CATACGAGAACTTGCGTTCACTTTTGCGAA-TGATGGAAAACGCGTCAGAgtatgtgatg ... atttatgtagGTTTGTGTACAAGGACCCATGGGAGAA-GGAATATTCTCAGGTATGCCATT
EST: TCATACGAGAACTTGCGTTCACTTTTGCGAATGATGGAAAACGCGTCAGA GTTTGTGTACAAGGACCCATGGGAGAAGGAATATTCTCAGGTATGCCATTAEST: gi|100382686|gb|BY986915.1|BY986915
genomic: TCATACGAGAACTTGCGTTCACTTTTGCGAATGATGGAAAACGCGTCAGAgtatgtgatg ... atttatgtagGTTTGTGTACAAGGACCCATGGGAGAAGGAATATTCTCAGGTATGCCATTA
EST: TCATACGAGAACTTGCGTTCACTTTTGCGAATGATGGANAACGCGTCAGA GTTTGTGTACAAGGACCCATGGGAGAAGGAATATTCTCAGGTATGCCATTA
genomic: TCATACGAGAACTTGCGTTCACTTTTGCGAATGATGGAAAACGCGTCAGAgtatgtgatg ... atttatgtagGTTTGTGTACAAGGACCCATGGGAGAAGGAATATTCTCAGGTATGCCATTA
tggattcgacattttcatttgaaacattttgatagggttttatttatttatgtagGTTTGTGTACAAGGACCCATGGGAGAAGGAATATTCTCAGGTATGCCATTAGCACTTTCAGGTACCCGTCCAATGCTGGAGCGCATGGACTGGGGCGAGT
ttttgat putative branch site (score: 5)
tttattt putative PPT
ttttatttatttatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgatgctatgacttatagtgcttaccagtttgttaggccatttctctacatattgaagtccgactgtccacttaaaacttgagctcttctgggctattggtcctttctgcagaaacttcaacttatgtggattcgacattttcatttgaaacattttgatagggttttatttatttatgtagGTTTGTGTACAAGGACCCATGGGAGAAGGAATATTCTCAGGTATGCCATTAGCACTTTCAGGTACCCGTCCAATGCTGGAGCGCATGGACTGGGGCGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA