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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcctcatgaacttttgtggtcttttgagtatcttttatttgacaaagtattagtctccttcgaggactcactttgctttagtatgtgtcatttgctgaagtgaggaattacgtttaattgatgcacgattgcttgcagGCGAACCCACCTCAGCTGAACTCAAACCTTCTGTATATCAACCGGTACAGGCACCACTCCAGGCTGGTGTCGGAGGCAGCCTATTTTTACACCAACATTG

Basic information

species Physcomitrella patens
transcript PP1S49_250V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162167781|gb|FC344511.1|FC344511
EST:     CTCCTGGTGCTGATGACTTCCTTCCAGTTCTGATCTATGTGGTGATCAAG                         GCGAACCCACCTCAGCTGAACTCAAACCTTCTGTATATCAACCGGTACAGG
genomic: CTCCTGGTGCTGATGACTTCCTTCCAGTTCTGATCTATGTGGTGATCAAGgtaagttcct ... ttgcttgcagGCGAACCCACCTCAGCTGAACTCAAACCTTCTGTATATCAACCGGTACAGG
EST: gi|100421038|gb|BY993581.1|BY993581
EST:     CTCCTGGTGCTGATGACTTCCTTCCAGTTCTGATCTATGTGGTGATCAAG                         GCGAACCCACCTCAGCTGAACTCAAACCTTCTGTATATCAACCGGTACAGG
genomic: CTCCTGGTGCTGATGACTTCCTTCCAGTTCTGATCTATGTGGTGATCAAGgtaagttcct ... ttgcttgcagGCGAACCCACCTCAGCTGAACTCAAACCTTCTGTATATCAACCGGTACAGG
EST: gi|162184606|gb|FC360804.1|FC360804
EST:     CTCCTGGTGCTGATGACTTCCTTCCAGTTCTGATCTATGTGGTGATCAAG                         GCGAACCCACCTCAGCTGAACTCAAACCTTCTGTATATCAACCGGTACAGG
genomic: CTCCTGGTGCTGATGACTTCCTTCCAGTTCTGATCTATGTGGTGATCAAGgtaagttcct ... ttgcttgcagGCGAACCCACCTCAGCTGAACTCAAACCTTCTGTATATCAACCGGTACAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgtcatttgctgaagtgaggaattacgtttaattgatgcacgattgcttgcagGCGAACCCACCTCAGCTGAACTCAAACCTTCTGTATATCAACCGGTACAGGCACCACTCCAGGCTGGTGTCGGAGGCAGCCTATTTTTACACCAACATTG
                                aattgat  putative branch site (score: 4)
                      aattacgtttaatt  TA-rich tract