1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagttatgttccattggtggtacttgtcgtgattttcgatgatctgctgtaacgacagcagcatattctatgcagagtgagttacgtgactgctgcgtactgcaactcatcaagcttcttacttgtgcagGAGGAACGGAGGGCAGCTTTGCGGAAATATCAAGTTCACGATGAAACAATGCAG
species | Physcomitrella patens |
transcript | PP1S495_7V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCGGTACAAACGAAGTTTATCTAGTGTGGGACGACGAATTTTTCTCCATG GAGGAACGGAGGGCAGCTTTGCGGAAATATCAAGTTCACGATGAAACAATGEST: gi|208397762|gb|DC912545.1|DC912545
genomic: GCGGTACAAACGAAGTTTATCTAGTGTGGGACGACGAATTTTTCTCCATGgtaagttatg ... acttgtgcagGAGGAACGGAGGGCAGCTTTGCGGAAATATCAAGTTCACGATGAAACAATG
EST: GCGGTACAAACGAAGTTTATCTAGTGTGGGACGACGAATTTTTCTCCATG GAGGAACGGAGGGCAGCTTTGCGGAAATATCAAGTTCACGATGAAACAATGEST: gi|37835626|gb|BJ593638.1|BJ593638
genomic: GCGGTACAAACGAAGTTTATCTAGTGTGGGACGACGAATTTTTCTCCATGgtaagttatg ... acttgtgcagGAGGAACGGAGGGCAGCTTTGCGGAAATATCAAGTTCACGATGAAACAATG
EST: GCGGTACAAACGAAGTTTATCTAGTGTGGGACGACGAATTTTTCTCCATG GAGGAACGGAGGGCAGCTTTGCGGAAATATCAAGTTCACGATGAAACAATGEST: gi|67696502|gb|BJ956735.1|BJ956735
genomic: GCGGTACAAACGAAGTTTATCTAGTGTGGGACGACGAATTTTTCTCCATGgtaagttatg ... acttgtgcagGAGGAACGGAGGGCAGCTTTGCGGAAATATCAAGTTCACGATGAAACAATG
EST: GCGGTACAAACGAAGTTTATCTAGTGTGGGACGACGAATTTTTCTCCATG GAGGAACGGAGGGCAGCTTTGCGGAAATATCAAGTTCACGATGAAACAATGEST: gi|162273972|gb|FC450111.1|FC450111
genomic: GCGGTACAAACGAAGTTTATCTAGTGTGGGACGACGAATTTTTCTCCATGgtaagttatg ... acttgtgcagGAGGAACGGAGGGCAGCTTTGCGGAAATATCAAGTTCACGATGAAACAATG
EST: GCGGTACAAACGAAGTTTATTTAGTGTGGGACGACGAANNNNNNNCCATG GAGGAACGGAGGGCAGCTTTGCGGAAATATCAAGTTCACGATGAAACAATGEST: gi|208351509|gb|DC926327.1|DC926327
genomic: GCGGTACAAACGAAGTTTATCTAGTGTGGGACGACGAATTTTTCTCCATGgtaagttatg ... acttgtgcagGAGGAACGGAGGGCAGCTTTGCGGAAATATCAAGTTCACGATGAAACAATG
EST: GCGGTACAAACGAAGTTTATCTAGTGTGGGACGACGAATTTTTCTCCATG GAGGAACGGAGGGCAGCTTTGCGGAAATATCAAGTTCACGATGAAACAATG
genomic: GCGGTACAAACGAAGTTTATCTAGTGTGGGACGACGAATTTTTCTCCATGgtaagttatg ... acttgtgcagGAGGAACGGAGGGCAGCTTTGCGGAAATATCAAGTTCACGATGAAACAATG
agtgagttacgtgactgctgcgtactgcaactcatcaagcttcttacttgtgcagGAGGAACGGAGGGCAGCTTTGCGGAAATATCAAGTTCACGATGAAACAATGCAG
ttcttac putative branch site (score: 10)
cttcttactt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttatgttccattggtggtacttgtcgtgattttcgatgatctgctgtaacgacagcagcatattctatgcagagtgagttacgtgactgctgcgtactgcaactcatcaagcttcttacttgtgcagGAGGAACGGAGGGCAGCTTTGCGGAAATATCAAGTTCACGATGAAACAATGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT