1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cgtggaacataaaatcaagataaactcttgtaagtttcattttgcttaaaaccttggttttcctgattgcttgtgatgcggcgtggttattgtgtttcagAAATATCGACTTGCAAAGTATATGCCAGAGATCTCGGAAG
species | Physcomitrella patens |
transcript | PP1S490_9V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGATGGGTGTTCAAGGCATAACTATCTACCACGTGAAAAGCCATCTCCAG AAATATCGACTTGCAAAGTATATGCCAGAGNATCTCG-AAGEST: gi|208355697|gb|DC910519.1|DC910519
genomic: TGATGGGTGTTCAAGGCATAACTATCTACCACGTGAAAAGCCATCTCCAGgtttgagatc ... tgtgtttcagAAATATCGACTTGCAAAGTATATGCCAGAG-ATCTCGGAAG
EST: TGATGGGTGTTCAAGGCATANCTATCTACCACGTGAAAAGCCATCTCNAG AAATATCGACTTGCAA-GTATATGCCA-AGATCTCGGAA
genomic: TGATGGGTGTTCAAGGCATAACTATCTACCACGTGAAAAGCCATCTCCAGgtttgagatc ... tgtgtttcagAAATATCGACTTGCAAAGTATATGCCAGAGATCTCGGAA
ttaaaaccttggttttcctgattgcttgtgatgcggcgtggttattgtgtttcagAAATATCGACTTGCAAAGTATATGCCAGAGATCTCGGAAG
tcctgat putative branch site (score: 3)
ttattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtggaacataaaatcaagataaactcttgtaagtttcattttgcttaaaaccttggttttcctgattgcttgtgatgcggcgtggttattgtgtttcagAAATATCGACTTGCAAAGTATATGCCAGAGATCTCGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC