1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tggaaccgaggtagatgctagtattttaaccatgatggacatgtcgaaacatgaaattttaatacttcagttgaattggttgtgaactccatttttctagGCTGTCAAGGATGGTGTGCACATACTCAGTTTGTCACTCGGCGGCAGCACACCAAGTGGGAATGTTACCTATACGAATGGTTTGTCTATGGCGTGCTTGG
species | Physcomitrella patens |
transcript | PP1S48_63V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGCAGAAGGTACAGGAAGGTCCTCCGACATCATCGCTGCTATCGACCAG GCTGTCAAGGATGGTGTGCACATACTCAGTTTGTCACTCGGCGGCAGCACAEST: gi|162172061|gb|FC349302.1|FC349302
genomic: ATGCAGAAGGTACAGGAAGGTCCTCCGACATCATCGCTGCTATCGACCAGgtctgcttca ... atttttctagGCTGTCAAGGATGGTGTGCACATACTCAGTTTGTCACTCGGCGGCAGCACA
EST: ATGCAGAAGGTACAGGAAGGTCCTCCCACATCATCGCTGCTATCGACCAG GCTGTCAAGGATGGTGTGCACATACTCAGTTTGTCACTCGGCGGCAGCACA
genomic: ATGCAGAAGGTACAGGAAGGTCCTCCGACATCATCGCTGCTATCGACCAGgtctgcttca ... atttttctagGCTGTCAAGGATGGTGTGCACATACTCAGTTTGTCACTCGGCGGCAGCACA
gaaacatgaaattttaatacttcagttgaattggttgtgaactccatttttctagGCTGTCAAGGATGGTGTGCACATACTCAGTTTGTCACTCGGCGGCAGCACACCAAGTGGGAATGTTACCTATACGAATGGTTTGTCTATGGCGTGCTTGG
ttttaat putative branch site (score: 4)
ctccatttttct putative PPT
atgaaattttaatact TA-rich tract