Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatagtctgtcttcggatgctttctgcctagggttcttaacaccacaagtgaagtatggtgctcttttgaactgattaaggagtcatacgatttgtgatcatgagaatgtcaggaaattgtacagtaaaaagttgaggtaatagactgctgtgtgtttgaatcaactggaaatcgtctgttgcagGGATTGAGTTTCACAGCAGATATGCAAACGAGGAAAACAAGGACCTTTTCAGGAGGTTGGCGTATGAGGATTGCATTAGCTCGAGCTCTATTCATCGAGC

Basic information

species Physcomitrella patens
transcript PP1S47_97V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162187557|gb|FC363819.1|FC363819
EST:     AGCTGATCGATGCCTATTCAGCAGAAGCCCGCGCTTCCGCTATTCTCGCT                         GGATTGAGTTTCACAGCAGATATGCAAAC
genomic: AGCTGATCGATGCCTATTCAGCAGAAGCCCGCGCTTCCGCTATTCTCGCTgtgagtatag ... tctgttgcagGGATTGAGTTTCACAGCAGATATGCAAAC
EST: gi|100355178|gb|BY965043.1|BY965043
EST:     AGCTGATCGATGCCTATTCAGCAGAAGCCCGCGCTTCCGCTATTCTCGCT                         GGATTGAGTTTCACAGCAGATATGCA
genomic: AGCTGATCGATGCCTATTCAGCAGAAGCCCGCGCTTCCGCTATTCTCGCTgtgagtatag ... tctgttgcagGGATTGAGTTTCACAGCAGATATGCA
EST: gi|162199130|gb|FC375822.1|FC375822
EST:     AGCTGATCGATGCCTATTCAGCAGAAGCCCGCGCTTCCGCTATTCTCGCT                         GGATTGAGTTTCACAGCAGATATGCAAACGAGGAAAACAAGGACCTTTTCA
genomic: AGCTGATCGATGCCTATTCAGCAGAAGCCCGCGCTTCCGCTATTCTCGCTgtgagtatag ... tctgttgcagGGATTGAGTTTCACAGCAGATATGCAAACGAGGAAAACAAGGACCTTTTCA
EST: gi|162174580|gb|FC350235.1|FC350235
EST:     AGCTGATCGATGCCTATTCAGCAGAAGCCCGCGCTTCCGCTATTCTCGCT                         GGATTGAGTTTCACAGCAGATATGCAAACGAGGAAAACAAGGACCTTTTCA
genomic: AGCTGATCGATGCCTATTCAGCAGAAGCCCGCGCTTCCGCTATTCTCGCTgtgagtatag ... tctgttgcagGGATTGAGTTTCACAGCAGATATGCAAACGAGGAAAACAAGGACCTTTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttgaggtaatagactgctgtgtgtttgaatcaactggaaatcgtctgttgcagGGATTGAGTTTCACAGCAGATATGCAAACGAGGAAAACAAGGACCTTTTCAGGAGGTTGGCGTATGAGGATTGCATTAGCTCGAGCTCTATTCATCGAGC
        taataga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtatagtctgtcttcggatgctttctgcctagggttcttaacaccacaagtgaagtatggtgctcttttgaactgattaaggagtcatacgatttgtgatcatgagaatgtcaggaaattgtacagtaaaaagttgaggtaatagactgctgtgtgtttgaatcaactggaaatcgtctgttgcagGGATTGAGTTTCACAGCAGATATGCAAACGAGGAAAACAAGGACCTTTTCAGGAGGTTGGCGTATGAGGATTGCATTAGCTCGAGCTCTATTCATCGAGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT