1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ccgatcttggctggcagttataacatacattaattgttctttgaaaacacatgtaaacgtcgctgttgagcactgctgacatacttcccttgtatggcagTGATGATGCTATGCATGCTGATTCACCAGTATTGGCGGTTGAACTTGACGTTGAAGAACTGACAACCGAGAAGTGATGTTTTGCATTGGTGTGAGGGGTT
species | Physcomitrella patens |
transcript | PP1S47_94V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCCATTTACGGCACACGCTCTCCAGTTGACCATGGTTTTGTGGTGAACAG TGATGATGCTATGCATGCTGATTCACCAGTATTGGCGGTTGAACTTGACGTEST: gi|67693814|gb|BJ954047.1|BJ954047
genomic: GCCATTTACGGCACACGCTCTCCAGTTGACCATGGTTTTGTGGTGAACAGgtaagcctga ... tgtatggcagTGATGATGCTATGCATGCTGATTCACCAGTATTGGCGGTTGAACTTGACGT
EST: GCCATTTACGGCACACGCTCTCCAGTTGACCATGGTTTTGTGGTGAACAG TGATGATGCTATGCATGCTGATTCACCAGTATTGGCGGTTGAACTTGACGTEST: gi|37827852|gb|BJ585864.1|BJ585864
genomic: GCCATTTACGGCACACGCTCTCCAGTTGACCATGGTTTTGTGGTGAACAGgtaagcctga ... tgtatggcagTGATGATGCTATGCATGCTGATTCACCAGTATTGGCGGTTGAACTTGACGT
EST: GCCATTTACGGCACACGCTCTCCAGTTGACCATGGTTTTGTGGTGAACAG TGATGATGCTATGCATGCTGATTCACCAGTATTGGCGGTTGAACTTGACGTEST: gi|208345079|gb|DC925433.1|DC925433
genomic: GCCATTTACGGCACACGCTCTCCAGTTGACCATGGTTTTGTGGTGAACAGgtaagcctga ... tgtatggcagTGATGATGCTATGCATGCTGATTCACCAGTATTGGCGGTTGAACTTGACGT
EST: GCCATTTACGGCACACGCTCTCCAGTTGACCATGGTTTTGTGGTGAACAG TGATGATGCTATGCATGCTGATTCACCAGTATTGGCGGTTGAACTTGACGT
genomic: GCCATTTACGGCACACGCTCTCCAGTTGACCATGGTTTTGTGGTGAACAGgtaagcctga ... tgtatggcagTGATGATGCTATGCATGCTGATTCACCAGTATTGGCGGTTGAACTTGACGT
aacacatgtaaacgtcgctgttgagcactgctgacatacttcccttgtatggcagTGATGATGCTATGCATGCTGATTCACCAGTATTGGCGGTTGAACTTGACGTTGAAGAACTGACAACCGAGAAGTGATGTTTTGCATTGGTGTGAGGGGTT
tgctgac putative branch site (score: 1)
tacttccctt CT-rich tract
atgtaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccgatcttggctggcagttataacatacattaattgttctttgaaaacacatgtaaacgtcgctgttgagcactgctgacatacttcccttgtatggcagTGATGATGCTATGCATGCTGATTCACCAGTATTGGCGGTTGAACTTGACGTTGAAGAACTGACAACCGAGAAGTGATGTTTTGCATTGGTGTGAGGGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - -cacatgt