1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gtggaggtttcgtagcacattaagagaagtgttgttggagtgtgtggagtgtgcaatggatggcttgggtggtttacgaatggtgctcttggggatgcagATGTGGAGGTGGAGTTCACGAAGTCACAGCTGGTAGCAGGCATTCCAGGTGGTGGGTTCTGCATATGGTATGTGATGAAGAAGCACTGGTTGGCCAACAA
species | Physcomitrella patens |
transcript | PP1S47_5V6.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCCAGAATGGAACGACCACCTGATCACGTGGAGGTTGCCGTATTTCAAGA ATGTGGAGGTGGAGTTCACGAAGTCACAGCTGGTAGCAGGCATTCCAGGTGEST: gi|208364937|gb|DC947079.1|DC947079
genomic: GCCAGAATGGAACGACCACCTGATCACGTGGAGGTTGCCGTATTTCAAGAgtgagcaaca ... ggggatgcagATGTGGAGGTGGAGTTCACGAAGTCACAGCTGGTAGCAGGCATTCCAGGTG
EST: TGCCGTATTTCAAGN ATGTGGAGGTGGAGNTCACGAAGTCACAGCTGGTAGCAGGCATTCCAGGTGEST: gi|67696009|gb|BJ956242.1|BJ956242
genomic: TGCCGTATTTCAAGAgtgagcaaca ... ggggatgcagATGTGGAGGTGGAGTTCACGAAGTCACAGCTGGTAGCAGGCATTCCAGGTG
EST: GGAGGTTGCCGTATTTCAAGA ATGTGGAGGTGGAGTTCACGAAGTCACAGCTNGTAGCAGGCATTCCAGGTGEST: gi|162248338|gb|FC422553.1|FC422553
genomic: GGAGGTTGCCGTATTTCAAGAgtgagcaaca ... ggggatgcagATGTGGAGGTGGAGTTCACGAAGTCACAGCTGGTAGCAGGCATTCCAGGTG
EST: GCCAGAATGGAACGACCACCTGATCACGTGGAGGTTGCCGTATTTCAAGA ATGTGGAGGTGGAGTTCACGAAGTCACAGCTGGTAGCAGGCATTCCAGGTGEST: gi|208374778|gb|DC932047.1|DC932047
genomic: GCCAGAATGGAACGACCACCTGATCACGTGGAGGTTGCCGTATTTCAAGAgtgagcaaca ... ggggatgcagATGTGGAGGTGGAGTTCACGAAGTCACAGCTGGTAGCAGGCATTCCAGGTG
EST: GCCAGAATGGAACGACCACCTGATCACGTGGAGGTTGCCGTATTTCAAGA ATGTGGAGGTGGAGTTCACGAAGTCACAGCTGGTAGCAGGCATTCCAGGTG
genomic: GCCAGAATGGAACGACCACCTGATCACGTGGAGGTTGCCGTATTTCAAGAgtgagcaaca ... ggggatgcagATGTGGAGGTGGAGTTCACGAAGTCACAGCTGGTAGCAGGCATTCCAGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggaggtttcgtagcacattaagagaagtgttgttggagtgtgtggagtgtgcaatggatggcttgggtggtttacgaatggtgctcttggggatgcagATGTGGAGGTGGAGTTCACGAAGTCACAGCTGGTAGCAGGCATTCCAGGTGGTGGGTTCTGCATATGGTATGTGATGAAGAAGCACTGGTTGGCCAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC