1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gtttagtgagccgttatggaaattgattgaatatttgttcaaattcactcatttattgaatggagcgtcgcttactgatctgtcatgttcgtttttgcagTCAATTGCACGGCAGTGTCTAGAATCCCTGGAGTTCATTCATGGTTTAGGGCTAATTCACTGCGATTTGAAACCGGAAAATATCCTGGTGAAAAGTTACA
species | Physcomitrella patens |
transcript | PP1S47_312V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACAACAGAGAATCAGGTGGTGAGGTGTACTTTACGATGCCCCGTCTTCAG TCAATTGCACGGCAGTGTCTAGAATCCCTGGAGTTCATTCATGGTTTAGGGEST: gi|162256790|gb|FC432684.1|FC432684
genomic: ACAACAGAGAATCAGGTGGTGAGGTGTACTTTACGATGCCCCGTCTTCAGgtgtatttca ... gtttttgcagTCAATTGCACGGCAGTGTCTAGAATCCCTGGAGTTCATTCATGGTTTAGGG
EST: ACAACAGAGAATCAGGTGGTGAGGTGTACTTTACGATGCCCCGTCTTCAG TCAATTGCACGGCAGTGTCTAGAATCCCTGGAGTTCATTCATGGTTTAGGG
genomic: ACAACAGAGAATCAGGTGGTGAGGTGTACTTTACGATGCCCCGTCTTCAGgtgtatttca ... gtttttgcagTCAATTGCACGGCAGTGTCTAGAATCCCTGGAGTTCATTCATGGTTTAGGG
cactcatttattgaatggagcgtcgcttactgatctgtcatgttcgtttttgcagTCAATTGCACGGCAGTGTCTAGAATCCCTGGAGTTCATTCATGGTTTAGGGCTAATTCACTGCGATTTGAAACCGGAAAATATCCTGGTGAAAAGTTACA
tactgat putative branch site (score: 10)
ttcgttttt putative PPT
atttattgaat TA-rich tract