1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagttcataagcttcgatgtgattgaatgatggtagaatcactgcattggcgattgtcttctgtgtgacgttttcttttgacttaaagtgaatttggtacgtcctgtcacaaatcgcttctccaagcactgccccacaaccattatataggttcttaactttgctggtgctgattggttgcagAAAGGAGCTTTGAGCACTGCAGAGGTCTGTGAACAATTCGAGCTCTTTAATCTCAAGAATCGAAGATGGCAAATTCAAGGCACATGTGCTCCCAAAGGTG
species | Physcomitrella patens |
transcript | PP1S47_298V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CACTGATGAGGAATAGTGCAATTCTTGTATTTGCAAACAAACAAGATATG AAAGGAGCTTTGAGCACTGCAGAGGTCTGTGAACAATTCGAGCTCTTTAATEST: gi|162208431|gb|FC384186.1|FC384186
genomic: CACTGATGAGGAATAGTGCAATTCTTGTATTTGCAAACAAACAAGATATGgtaagttcat ... ttggttgcagAAAGGAGCTTTGAGCACTGCAGAGGTCTGTGAACAATTCGAGCTCTTTAAT
EST: CACTGATGAGGAATAGTGCAATTCTTGTATTTGCAAACAAACAAGATATG AAAGGAGCTTTGAGCACTGCAGAGGTCTGTGAACAATTCGAGCTCTTTAATEST: gi|162268630|gb|FC443684.1|FC443684
genomic: CACTGATGAGGAATAGTGCAATTCTTGTATTTGCAAACAAACAAGATATGgtaagttcat ... ttggttgcagAAAGGAGCTTTGAGCACTGCAGAGGTCTGTGAACAATTCGAGCTCTTTAAT
EST: CACTGATGAGGAATAGTGCAATTCTTGTATTTGCAAACAAACAAGATATG AAAGGAGCTTTGAGCACTGCAGAGGTCTGTGAACAATTCGAGCTCTTTAATEST: gi|67575986|gb|BJ948810.1|BJ948810
genomic: CACTGATGAGGAATAGTGCAATTCTTGTATTTGCAAACAAACAAGATATGgtaagttcat ... ttggttgcagAAAGGAGCTTTGAGCACTGCAGAGGTCTGTGAACAATTCGAGCTCTTTAAT
EST: CACTGATGAGGAATAGTGCAATTCTTGTATTTGCAAACAAACAAGATATG AAAGGAGCTTTGAGCACTGCAGAGGTCTGTGAACAATT
genomic: CACTGATGAGGAATAGTGCAATTCTTGTATTTGCAAACAAACAAGATATGgtaagttcat ... ttggttgcagAAAGGAGCTTTGAGCACTGCAGAGGTCTGTGAACAATT
ctgccccacaaccattatataggttcttaactttgctggtgctgattggttgcagAAAGGAGCTTTGAGCACTGCAGAGGTCTGTGAACAATTCGAGCTCTTTAATCTCAAGAATCGAAGATGGCAAATTCAAGGCACATGTGCTCCCAAAGGTG
attatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcataagcttcgatgtgattgaatgatggtagaatcactgcattggcgattgtcttctgtgtgacgttttcttttgacttaaagtgaatttggtacgtcctgtcacaaatcgcttctccaagcactgccccacaaccattatataggttcttaactttgctggtgctgattggttgcagAAAGGAGCTTTGAGCACTGCAGAGGTCTGTGAACAATTCGAGCTCTTTAATCTCAAGAATCGAAGATGGCAAATTCAAGGCACATGTGCTCCCAAAGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG