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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcatgcaattgccgctttctctgaacccggtcgcaatctcacgaccttcgcaaaacgaaactgatgtaggctaaacagtcttagatagccaattttgggatgggcttgagtgcacaaaccagggatgtagtctgtttaatgccagggttatcggtgagtctaaccccctaagcattgaggtgttgcagGTTGACTTGGCAGGCTCAGAAAGGGCGAAGCGTACGGGTGCCGTTGGCATGCGTTTCAAAGAGTCTGTTACTATCAACTGTGGTCTGCTTGCTTTAGGCA

Basic information

species Physcomitrella patens
transcript PP1S47_261V6.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S47_261V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: EFJ34540 (Selaginella moellendorffii), 3'ss of exon 4
gtgagtcatgcaattgccgctttctctgaacccggtcgcaatctcacgaccttcgcaaaacgaaactgatgtaggctaaacagtcttagatagccaattttgggatgggcttgagtgcacaaaccagggatgtagtctgtttaatgccagggttatcggtgagtctaaccccctaagcattgaggtgttgcagGTTGACTTGGCAGGCTCAGAAAGGGCGAAGCGTACGGGTGCCGTTGGCATGCGTTTCAAAGAGTCTGTTACTATCAACTGTGGTCTGCTTGCTTTAGGCA
                                                                                                                                      || ||   || ||      | | |    |||  |    | ||  | |    |||   |||| || ||||| || |||||  | || ||  | || || ||||| ||||||||||||||||| || || ||||||||||| || ||  | ||| | || |
--------------------------------------------------------------------------------------------------------------------------------------gtatgcacaa-gcgctcacttttgacttgtc--aatgacaaattactctactgtgctagGTAGATTTGGCTGGTTCAGAGCGTGCAAAAAGGACTGGAGCCGTAGGCATGCGTTTCAAAGAATCGGTAACTATCAACTGCGGGCTTTTAGCTCTTGGAA

upper sequence: PP1S47_261V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: EFJ10118 (Selaginella moellendorffii), 3'ss of exon 4
gtgagtcatgcaattgccgctttctctgaacccggtcgcaatctcacgaccttcgcaaaacgaaactgatgtaggctaaacagtcttagatagccaattttgggatgggcttgagtgcacaaaccagggatgtagtctgtttaatgccagggttatcggtgagtctaaccccctaagcattgaggtgttgcagGTTGACTTGGCAGGCTCAGAAAGGGCGAAGCGTACGGGTGCCGTTGGCATGCGTTTCAAAGAGTCTGTTACTATCAACTGTGGTCTGCTTGCTTTAGGCA
                                                                                                                                      || |||  || ||      | | |    |||  |    | ||  | |    |||   |||| || ||||| || |||||  | || ||  | || || ||||| ||||||||||||||||| || || ||||||||||| || ||  | ||| | || |
--------------------------------------------------------------------------------------------------------------------------------------gtatgtacaa-gcgctcacttttgacttgtc--aatgacaaattactctactgtgctagGTAGATTTGGCTGGTTCAGAGCGTGCAAAAAGGACTGGAGCCGTAGGCATGCGTTTCAAAGAATCGGTAACTATCAACTGCGGGCTTTTAGCTCTTGGGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttaatgccagggttatcggtgagtctaaccccctaagcattgaggtgttgcagGTTGACTTGGCAGGCTCAGAAAGGGCGAAGCGTACGGGTGCCGTTGGCATGCGTTTCAAAGAGTCTGTTACTATCAACTGTGGTCTGCTTGCTTTAGGCA
                        gtctaac  putative branch site (score: 2)