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...aaatctgggttaccagtatgtactaactgtggtatataatttttcaacagataggttcgaaagatatacccctgattatcgtgctgcattgtaattgcagATCGGCAGGCGTCAGAGCTACATTCTAGAGCTATCGTTGAATTTTGTGGTCG
species | Physcomitrella patens |
transcript | PP1S47_245V6.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGGTTAAAAGTGGAAGGGGGAGTTCCAGATGCTCCAGAGATGGCACTTA ATCGGCAGGCGTCAGAGCTACATTCTAGAGCTATCGTTGAATTTTGTGGTCEST: gi|208396939|gb|DC915959.1|DC915959
genomic: TTGGTTAAAAGTGGAAGGGGGAGTTCCAGATGCTCCAGAGATGGCACTTAgtaagtaatc ... gtaattgcagATCGGCAGGCGTCAGAGCTACATTCTAGAGCTATCGTTGAATTTTGTGGTC
EST: TTGGTTAAAAGTGGAAGGGGGAGTTCCAGATGCTCCAGAGATGGCACTTA ATCGGCAGGCGTCAGAGCTACATTCTAGAGCTATCGTTGAATTTTGTGGTCEST: gi|18366115|gb|BJ198193.1|BJ198193
genomic: TTGGTTAAAAGTGGAAGGGGGAGTTCCAGATGCTCCAGAGATGGCACTTAgtaagtaatc ... gtaattgcagATCGGCAGGCGTCAGAGCTACATTCTAGAGCTATCGTTGAATTTTGTGGTC
EST: TGGTTAAAAGTGGAAGGGGGGAGTTCCAGATGCTCCAGAGATGGCACTTA ATCGGCAGGCGTCAGAGCTACATTCTAGAGCTATCGTTGAATTEST: gi|162259549|gb|FC435476.1|FC435476
genomic: TGGTTAAAAGTGGAAGGGGG-AGTTCCAGATGCTCCAGAGATGGCACTTAgtaagtaatc ... gtaattgcagATCGGCAGGCGTCAGAGCTACATTCTAGAGCTATCGTTGAATT
EST: TTGGTTAAAAGTGGAAGGGGGAGTTCCAGATGCTCCAGAGATGGCACTTA ATCGGCAGGCGTCAGAGCTACATTCTAGAGCTATCGTTGAATTTTGTGGTC
genomic: TTGGTTAAAAGTGGAAGGGGGAGTTCCAGATGCTCCAGAGATGGCACTTAgtaagtaatc ... gtaattgcagATCGGCAGGCGTCAGAGCTACATTCTAGAGCTATCGTTGAATTTTGTGGTC
aacagataggttcgaaagatatacccctgattatcgtgctgcattgtaattgcagATCGGCAGGCGTCAGAGCTACATTCTAGAGCTATCGTTGAATTTTGTGGTCG
ccctgat putative branch site (score: 19)
aaagatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatctgggttaccagtatgtactaactgtggtatataatttttcaacagataggttcgaaagatatacccctgattatcgtgctgcattgtaattgcagATCGGCAGGCGTCAGAGCTACATTCTAGAGCTATCGTTGAATTTTGTGGTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgca