Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgcttctgctcaaaatcatatacgaatgagagactgatgctattttttgctctttcccgtatttcgatgaccttatgccgagatgcgctttcagaacatgttttacatgcactcagctaattgacaggcatggtttcgtgatggtaagtttagaacataccacttatactttttgatgtgcgtcggagacagACTCTTGTTACTGGATTCGCAAGAATCATGGGACAACCAGTGGGAATTGTGGGGAACAATGGCATACTTTTCACGGAATCGGCTTTGAAAGGGGCGCATT

Basic information

species Physcomitrella patens
transcript PP1S47_126V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162162730|gb|FC337784.1|FC337784
EST:     GCATCGTTGATGGAAGTGAGTTTGACGAGTTCAAGAAACTCTATGGCTCT                         ACTCTTGTTACTGGATTCGCAAGAATCATGGGACAACCAGTGGGAATTGTG
genomic: GCATCGTTGATGGAAGTGAGTTTGACGAGTTCAAGAAACTCTATGGCTCTgtaagtgctt ... tcggagacagACTCTTGTTACTGGATTCGCAAGAATCATGGGACAACCAGTGGGAATTGTG
EST: gi|162179960|gb|FC356031.1|FC356031
EST:     GCATCGTTGATGGAAGTGAGTTTGACGAGTTCAAGAAACTCTATGGCTCT                         ACTCTTGTTACTGGATTCGCAAGAATCATGGGACAACCAGTGGGAATTGTG
genomic: GCATCGTTGATGGAAGTGAGTTTGACGAGTTCAAGAAACTCTATGGCTCTgtaagtgctt ... tcggagacagACTCTTGTTACTGGATTCGCAAGAATCATGGGACAACCAGTGGGAATTGTG
EST: gi|162180420|gb|FC355841.1|FC355841
EST:     GCATCGTTGATGGAAGTGAGTTTGACGAGTTCAAGAAACTCTATGGCTCT                         ACTCTTGTTACTGGATTCGCAAGAATCATGGGACAACCAGTGGGAATTGTG
genomic: GCATCGTTGATGGAAGTGAGTTTGACGAGTTCAAGAAACTCTATGGCTCTgtaagtgctt ... tcggagacagACTCTTGTTACTGGATTCGCAAGAATCATGGGACAACCAGTGGGAATTGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgatggtaagtttagaacataccacttatactttttgatgtgcgtcggagacagACTCTTGTTACTGGATTCGCAAGAATCATGGGACAACCAGTGGGAATTGTGGGGAACAATGGCATACTTTTCACGGAATCGGCTTTGAAAGGGGCGCATT
                                 ttttgat  putative branch site (score: 4)
                          ttatactttttgat  TA-rich tract