1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtagaagattttttaataggcaaaggggactttgcttatttattttaatggatgatccaattaatgcaagtgctgaagataccatacaacgattttcatatctcagtaactaaaatttacgtttttttaaatttttttccctcccctgtgaagAGAATTTGCTGGTCACGAAGGACGTGATTAAGGTTGCTGATTTTGGTCTTGCGAGGGAAGTACAGTCATCTCCACCGTACACAGATTATGTCTCTACTCG
species | Physcomitrella patens |
transcript | PP1S479_13V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTAGAGTACATGCACAAGAATGGCTATTTCCACAGAGATCTGAAACCAG AGAATTTGCTGGTCACGAAGGACGTGATTAAGGTTGCTGATTTTGGTCTTGEST: gi|162166081|gb|FC342557.1|FC342557
genomic: GTTAGAGTACATGCACAAGAATGGCTATTTCCACAGAGATCTGAAACCAGgtagaagatt ... ccctgtgaagAGAATTTGCTGGTCACGAAGGACGTGATTAAGGTTGCTGATTTTGGTCTTG
EST: GTTAGAGTACATGCACAAGAATGGCTATTTCCACAGAGATCTGAAACCAG AGAATTTGCTGGTCACGAAGGACGTGATTAAGGTTGCTGATTTTGGTCTTG
genomic: GTTAGAGTACATGCACAAGAATGGCTATTTCCACAGAGATCTGAAACCAGgtagaagatt ... ccctgtgaagAGAATTTGCTGGTCACGAAGGACGTGATTAAGGTTGCTGATTTTGGTCTTG
tatctcagtaactaaaatttacgtttttttaaatttttttccctcccctgtgaagAGAATTTGCTGGTCACGAAGGACGTGATTAAGGTTGCTGATTTTGGTCTTGCGAGGGAAGTACAGTCATCTCCACCGTACACAGATTATGTCTCTACTCG
aactaaa putative branch site (score: 2)
cgtttttttaaatttt putative PPT
agtaactaaaatttac TA-rich tract