1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgcagattaactccaacatattattattattattattattattttttctattcaaagcaccgagctcttgatctcttgggcggagaactaattgtacatgagccatgtgttggggtgtttctgcaaagGGTTCTGTACTAGTGAAGTATCCAGCCCTCCTGTCGATGGGGTGCTTGACGGAACTATTTGGGTCCATTCAAGTGGGTATTATTGGAGCCGCAATGAAGG
species | Physcomitrella patens |
transcript | PP1S46_43V6.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTTATCTACTATTAAATTGCACCTTGTGGGGGTTGTATCTCATAAATCAG GGTTCTGTACTAGTGAAGTATCCAGCCCTCCTGTCGATGGGGTGCTTGACGEST: gi|37837339|gb|BJ595347.1|BJ595347
genomic: TTTATCTACTATTAAATTGCACCTTGTGGGGGTTGTATCTCATAAATCAGgtgcagatta ... ttctgcaaagGGTTCTGTACTAGTGAAGTATCCAGCCCTCCTGTCGATGGGGTGCTTGACG
EST: TTTATCTACTATTAAATTGCACCTTGTGGGGGTTGTATCTCATAAATCAG GGTTCTGTACTAGTGAAGTATCCAGCCCTCCTGTCGATGGGGTGCTTGACGEST: gi|208380165|gb|DC927444.1|DC927444
genomic: TTTATCTACTATTAAATTGCACCTTGTGGGGGTTGTATCTCATAAATCAGgtgcagatta ... ttctgcaaagGGTTCTGTACTAGTGAAGTATCCAGCCCTCCTGTCGATGGGGTGCTTGACG
EST: TTTATCTACTATTAAATTGCACCTTGTGGGGGTTGTATCTCATAAATCAG GGTTCTGTACTAGTGAAGTATCCAGCCCTCCTGTCGATGGGGTGCTTGACGEST: gi|208362740|gb|DC950540.1|DC950540
genomic: TTTATCTACTATTAAATTGCACCTTGTGGGGGTTGTATCTCATAAATCAGgtgcagatta ... ttctgcaaagGGTTCTGTACTAGTGAAGTATCCAGCCCTCCTGTCGATGGGGTGCTTGACG
EST: TTTATCTACTATTAAATTGCACCTTGTGGGGGTTGTATCTCATAAATCAG GGTTCTGTACTAGTGAAGTATCCAGCCCTCCTGTCGATGGGGTGCTTGACG
genomic: TTTATCTACTATTAAATTGCACCTTGTGGGGGTTGTATCTCATAAATCAGgtgcagatta ... ttctgcaaagGGTTCTGTACTAGTGAAGTATCCAGCCCTCCTGTCGATGGGGTGCTTGACG
tcttgggcggagaactaattgtacatgagccatgtgttggggtgtttctgcaaagGGTTCTGTACTAGTGAAGTATCCAGCCCTCCTGTCGATGGGGTGCTTGACGGAACTATTTGGGTCCATTCAAGTGGGTATTATTGGAGCCGCAATGAAGG
aactaat putative branch site (score: 2)
tgtttct putative PPT
aactaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcagattaactccaacatattattattattattattattattttttctattcaaagcaccgagctcttgatctcttgggcggagaactaattgtacatgagccatgtgttggggtgtttctgcaaagGGTTCTGTACTAGTGAAGTATCCAGCCCTCCTGTCGATGGGGTGCTTGACGGAACTATTTGGGTCCATTCAAGTGGGTATTATTGGAGCCGCAATGAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG