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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtaacccaactttagtcccattctcctttcttccaacgtcgaaagcggtattgtttgtcttcttgtgtgtctgagattgtaaagctgttggctctgcagGACTACGTGCAGAAATTCCCAGATGTGATAGTTTTGGATCCACCGGGTGCAATTCAGCAACTCAGGAATCGACAATCTATGTTACAAGACGTAGCAGACT

Basic information

species Physcomitrella patens
transcript PP1S46_310V6.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100376706|gb|BY949425.1|BY949425
EST:     TTGGCAGGAAAGGAATGGCGGCAAGAGCTAGAG                         GACTACGTGCAGAAATTCCCAGATGTGATAGTTTTGGATCCACCGGGTGCA
genomic: TTGGCAGGAAAGGAATGGCGGCAAGAGCTAGAGgtgagacaaa ... ggctctgcagGACTACGTGCAGAAATTCCCAGATGTGATAGTTTTGGATCCACCGGGTGCA
EST: gi|100424319|gb|BY958425.1|BY958425
EST:     TTGGCAGGAAAGGAATGGCGGCAAGAGCTAGAG                         GACTACGTGCAGAAATTCCCAGATGTGATAGTTTTGGATCCACCGGGTGCA
genomic: TTGGCAGGAAAGGAATGGCGGCAAGAGCTAGAGgtgagacaaa ... ggctctgcagGACTACGTGCAGAAATTCCCAGATGTGATAGTTTTGGATCCACCGGGTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcggtattgtttgtcttcttgtgtgtctgagattgtaaagctgttggctctgcagGACTACGTGCAGAAATTCCCAGATGTGATAGTTTTGGATCCACCGGGTGCAATTCAGCAACTCAGGAATCGACAATCTATGTTACAAGACGTAGCAGACT
                               attgtaaa  TA-rich tract