Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttacatatccttggccatttctctgttaactgagtttttctggctcttcccttatacttcttgtatcaaattgagttatctcagcatttcggtaatgctttcagtttgccgttgtgaaactgaatcgaagatattgctgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAAGGACCTATGACTCCACTTCCAGATGTGGTCACCATCCATATGC

Basic information

species Physcomitrella patens
transcript PP1S454_3V6.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S454_3V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: LOC_Os07g41750.1 (Oryza sativa), 3'ss of exon 5
gtatgttacatatccttggccatttctctgttaactgagtttttctggctcttcccttatacttcttgtatcaaattgagttatctcagcatttcggtaatgctttcagtttgccgttgtgaaactgaatcgaagatattgctgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAAGGACCTATGACTCCACTTCCAGATGTGGTCACCATCCATATGC
                                                 | |   | || | | | |   |   | | |  | |  | |  |    || ||   || | |||     |  ||| |||  ||           ||| ||| |||| ||  ||||||| ||||||||||| ||||| || |||||||| ||||||||||||||||| ||||||||  | || ||| | || |||||||||   |
------------------------------------------------gtttgtacataaaatccatccgtttgaataaaatgttgctgtctccttgtgatagcttgaatttttttcttagaagctgcttc----------ttgttttc-agGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGCAAGCAAGGACCAATGACTCCTTTACCGGATCTTGTTACCATCCATGCCC

upper sequence: PP1S454_3V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: LOC_Os03g38000.2 (Oryza sativa), 3'ss of exon 3
gtatgttacatatccttggccatttctctgttaactgagtttttctggctcttcccttatacttcttgtatcaaattgagttatctcagcatttcggtaatgctttcagtttgccgttgtgaaactgaatcgaagatattgctgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAAGGACCTATGACTCCACTTCCAGATGTGGTCACCATCCATATGC
                                                              || ||   |  || | |   |||  || ||||    ||  | |   | |     | |   |||  | | |     |||    | ||  |||| ||| | || |||||||| |||||||||||||||||||| ||||||||||||   || || |  || || || || ||| | || |||||||||   |
------------------------------------------------------------gtttgtttggttcaactcaagcatcgtagtattta---aaaacctcatgatctttttggctcaacgcacttgtt--cattatc-ttttgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTCGACTGGGACCCCAAGGGCAAGGTTGGCCCGACCACCCCTCTGCCGGATCTTGTAACCATCCATGCTC

upper sequence: PP1S454_3V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: GRMZM2G093902_T02 (Zea mays), 3'ss of exon 5
gtatgttacatatccttggccatttctctgttaactgagtttttctggctcttcccttatacttcttgtatcaaattgagttatctcagcatttcggtaatgctttcagtttgccgttgtgaaactgaatcgaagatattgctgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAAGGACCTATGACTCCACTTCCAGATGTGGTCACCATCCATATGC
                                                        ||       | |||||| ||   ||||||| |  ||      | |      |  | || |||   ||    | || |    | |  || |||| |||| ||  | ||||||||||| ||||| ||||| ||||||||||| |||||||||||||| || |  |  ||  | || ||| |||| || || ||  |||
-------------------------------------------------------gtttggtgcttggtatcagat---gttatcttattatgcaaaca-tataacaaaatagctgttagtaat---actctagttgact--tggcttc-agGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGCAAGCAAGGGCCAACCATGCCTTTACCTGATTTGGTTACAATTCACGTGC

upper sequence: PP1S454_3V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: GRMZM2G074300_T03 (Zea mays), 3'ss of exon 3
gtatgttacatatccttggccatttctctgttaactgagtttttctg-gctcttcccttatacttcttgtatcaaattgagttatctcagcatttcggtaatgctttcagtttgccgttgtgaaactgaatcgaagatattgctgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAAGGACCTATGACTCCACTTCCAGATGTGGTCACCATCCATATGC
                                   |  ||||| ||    |   || || || |   ||| |     || || | | |  |||||  |  | | |   | | |    || | ||     |||     | || ||||| |  |||| ||| ||||||||||||| ||||||||||| |||||||| || |||||||||   || || || || || ||||| ||  |||| ||||||||||  |
----------------------------------gtttgttttgctacaattgcccgttgtaatgtctgtttgtctctgggtaagcacttcattttcg--acgttccaaatgtaat-ttctcaacaaacatc-----tttttctgtcgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGCAAGGTTGGCCCGATCACCCCTCTTCCGGACCTGGTGACCATCCATACCC

upper sequence: PP1S454_3V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: GRMZM2G099352_T01 (Zea mays), 3'ss of exon 3
gtatgttacatatccttggccatttctctgttaactgagtttttctggctcttcccttatacttcttgtatcaaattgagttatctcagcatttcggtaatgctttcagtttgccgttgtgaaactgaatcgaagatattgctgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAAGGACCTATGACTCCACTTCCAGATGTGGTCACCATCCATATGC
                          | ||||  |||   | | ||   | ||   |  |   ||       ||   |||      |  | |||      ||||| || |||    ||    |||| | |  ||       |||||    |||| ||| | || |||||||| ||||||||||| |||||||| || |||||||||   || || || ||||| ||||| ||  |||| |||||||| |  |
-------------------------gtttgtttgctgtaatctcctcaatgtttggtcgtctctc-------aa---gagcagggactacgttttccacgtgctt-caattta--attacccaactaacttcaat------ctgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGCAAGGTTGGCCCGATCACTCCTCTTCCGGACCTGGTGACCATCCACACCC

upper sequence: PP1S454_3V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: AT5G35530.1 (Arabidopsis thaliana), 3'ss of exon 5
gtatgttacatatccttggccatttctctgttaactgagtttttctggctcttcccttatacttcttgtatcaaattgagttatctcagcatttcggtaatgctttcagtttgccgttgtgaaactgaatcgaagatattgctgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAAGGACCTATGACTCCACTTCCAGATGTGGTCACCATCCATATGC
                                                         |    |  |   |    |   |  | | ||   | |    |  | | |  |||  |   ||||| |||   |     | || |    | | | |||| ||  | ||| ||||||| ||||||||||| |||||||| ||||||||||| |||||||| ||||| ||| | || ||||| || | ||||||||  |
--------------------------------------------------------gtcagttcttcacagtgga--aacctgtttcttgaatcacattctacct--agtgagatcttgtgtaacctgaatctggttaatcacatgtgc-agGGTGTGCTTGGTCTCAAGGTGAAGATCATGCTTGACTGGGACCCCAAGGGCAAACAAGGACCGATGACACCATTGCCTGATGTTGTGATCATCCATACAC

upper sequence: PP1S454_3V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: Vv04s0008g01750.t01 (Vitis vinifera), 3'ss of exon 5
gtatgttacatatccttggccatttctctgttaactgagtttttctggctcttcccttatacttcttgtatcaaattgagttatct----cagcatttcggtaatg-ctttcagtttgccgttgtgaaactgaatcgaagatattgctgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAAGGACCTATGACTCCACTTCCAGATGTGGTCACCATCCATATGC
                                              |    | |  | ||   || ||  |    |||| || |      |  ||| | | |     | ||   ||||  |        |||| |      |  |   || |  ||||| ||  | ||||||||||||||||||||||||||||||||||||||||||||||| || || |  |||||| | || ||| |||| || || || |  |
----------------------------------------------gtacatgctataatgtctcctggttttggttgaattgttagctgccacatcttgatttcatcattttatttgttgaatcccggctgattttccttttctatggtgta-tagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAGGGCCCCACAACTCCATTGCCTGATCTGGTGACTATTCACACAC

upper sequence: PP1S454_3V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: Vv09s0002g01460.t01 (Vitis vinifera), 3'ss of exon 5
gtatgttacatatccttggccatttctctgttaactgagtttttctggctcttcccttatacttcttgtatcaaattgagttatctcagcatttcggtaatgctttcagtttgccgttgtgaaactgaatcgaagatattgctgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAAGGACCTATGACTCCACTTCCAGATGTGGTCACCATCCATATGC
                                                ||| |     ||  ||| | || |   ||   | || |||   |||  ||  | || | | ||  |   | |   |||   | |   |  |   || |    |||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| || ||||  || || || || ||| | ||||||||||| |  |
---------------------------------------------aatctcctattgcatggttcct-tacctgctt---tgatttcaatgttttagttgt-ctattacttcccaccttttttacttttttgtgaacttaattggcac--agGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGCAAGCAGGGCCCTAAAACACCTCTACCTGATCTTGTCACCATCCACACCC

upper sequence: PP1S454_3V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: Vv11s0016g01380.t01 (Vitis vinifera), 3'ss of exon 5
gtatgttacatatccttggccatttctctgttaactgagtttttctggctcttcccttatacttcttgtatcaaattgagttatctcagcatttcggtaatgctttcagtttgccgttgtgaaactgaatcgaagatattgctgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAAGGACCTATGACTCCACTTCCAGATGTGGTCACCATCCATATGC
               || ||  |  |||    |  |||  | |||  |||  |   |  ||        | | | |   ||  |     |  ||   ||      |     |   ||  |||   ||    | |    ||||  ||    |||| ||  | ||||||||||||||||||||||| || |||||||||||||| |||||||| || |  || || || || ||| | ||||||||||| |  |
--------------gtttgct-tcactcacccagttgatctgttcatgcttctttttgttaacatcctcaaccattgcggtggttcatacggttgcttaccttcattgcaattgtgtcctgatcatgttctggattgcttgccatcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAAAGCAAGGCCCCAAAACGCCTCTCCCTGATCTTGTCACCATCCACACTC

upper sequence: PP1S454_3V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: EFJ31038 (Selaginella moellendorffii), 3'ss of exon 5
gtatgttacatatccttggccatttctctgttaactgagtttttctggctcttcccttatacttcttgtatcaaattgagttatctcagcatttcggtaatgctttcagtttgccgttgtgaaactgaatcgaagatattgctgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAAGGACCTATGACTCCACTTCCAGATGTGGTCACCATCCATATGC
                                                                                      ||  |  |||   ||  |||   ||||   |   |   || |      |||  ||||| |    |||| |||||||| |||||||| ||||||||||| ||||||||||| |||||||||   || ||   ||| || || || ||  |||| || |||||  | |
-----------------------------------------------------------------------------------gtgcaagaactcg---atcgttttgatttgg-atccagtttctaagcattggattgtgctggc----agGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC

upper sequence: PP1S454_3V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: EFJ34304 (Selaginella moellendorffii), 3'ss of exon 5
gtatgttacatatccttggccatttctctgttaactgagtttttctggctcttcccttatacttcttgtatcaaattgagttatctcagcatttcggtaatgctttcagtttgccgttgtgaaactgaatcgaagatattgctgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAAGGACCTATGACTCCACTTCCAGATGTGGTCACCATCCATATGC
                                                                                      ||  |  ||| | ||   ||   ||||   |   |   || |      |||  ||||| ||   |||| |||||||| |||||||| ||||||||||| ||||||||||| |||||||||   || ||   ||| || || || ||  |||| || |||||  | |
-----------------------------------------------------------------------------------gtacaagaactcgatcat---tttgatttgg-atccagtttctaagcattggattgtgctggctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC

upper sequence: PP1S454_3V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: EFJ34676 (Selaginella moellendorffii), 3'ss of exon 5
gtatgttacatatccttggccatttctctgttaactgagtttttctggctcttcccttatacttcttgtatcaaattgagttatctcagcatttcggtaatgctttcagtttgccgttgtgaaactgaatcgaagatattgctgtcttct---agGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAAGGACCTATGACTCCACTTCCAGATGTGGTCACCATCCATATGC
                                                                                                | ||    |  |   |   | | || | |    |   |   ||||   | ||||   |||| |||||||| |||||||| ||||||||||| ||||||||||| |||||||||   || ||   ||| || || || ||  |||| || |||||  | |
----------------------------------------------------------------------------------------------gtgcaagaactcgatcgttttgatttggatccagtttctaagcattggattgttctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162222732|gb|FC398986.1|FC398986
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|37827833|gb|BJ585845.1|BJ585845
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|18333003|gb|BJ165017.1|BJ165017
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|208365648|gb|DC944118.1|DC944118
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|162239611|gb|FC416867.1|FC416867
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|37846539|gb|BJ604547.1|BJ604547
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|18338770|gb|BJ170795.1|BJ170795
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|162239612|gb|FC416868.1|FC416868
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|18340856|gb|BJ172887.1|BJ172887
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|37839859|gb|BJ597867.1|BJ597867
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|67704629|gb|BJ964862.1|BJ964862
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|37846140|gb|BJ604148.1|BJ604148
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|37835173|gb|BJ593185.1|BJ593185
EST:     CTGTCAATGATTACATNGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAG--TTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|162234787|gb|FC409273.1|FC409273
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|37839588|gb|BJ597596.1|BJ597596
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|37830125|gb|BJ588137.1|BJ588137
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|37832573|gb|BJ590585.1|BJ590585
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|37831537|gb|BJ589549.1|BJ589549
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|18340854|gb|BJ172885.1|BJ172885
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|162245549|gb|FC424103.1|FC424103
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|67721818|gb|BJ972077.1|BJ972077
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|162221281|gb|FC398091.1|FC398091
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|162267185|gb|FC442597.1|FC442597
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|162230385|gb|FC406949.1|FC406949
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|67698406|gb|BJ958639.1|BJ958639
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|162222733|gb|FC398987.1|FC398987
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|162274010|gb|FC450357.1|FC450357
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|162246025|gb|FC421888.1|FC421888
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|162274011|gb|FC450358.1|FC450358
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|208393090|gb|DC929585.1|DC929585
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|67574976|gb|BJ947800.1|BJ947800
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|208355655|gb|DC929933.1|DC929933
EST:     CTGTCAATGATTACATCGACAGTGCTGTTANGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCANGGTCAANATCATGCTCGAC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGAC
EST: gi|100399202|gb|BY954251.1|BY954251
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|100400230|gb|BY954373.1|BY954373
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|18339829|gb|BJ171856.1|BJ171856
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|37828911|gb|BJ586923.1|BJ586923
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|162242773|gb|FC416412.1|FC416412
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|162209056|gb|FC385608.1|FC385608
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|162247731|gb|FC423389.1|FC423389
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|100370712|gb|BY948478.1|BY948478
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATNCA-GGTCAAGATCATGCTCGACTGGGATCCCAAGGG
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTAT-CAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGG
EST: gi|162245548|gb|FC424102.1|FC424102
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|18334880|gb|BJ166897.1|BJ166897
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|37842073|gb|BJ600081.1|BJ600081
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|162247730|gb|FC423388.1|FC423388
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|162209055|gb|FC385607.1|FC385607
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|162221282|gb|FC398092.1|FC398092
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|18336627|gb|BJ168650.1|BJ168650
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|37839226|gb|BJ597234.1|BJ597234
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|37829172|gb|BJ587184.1|BJ587184
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|37845967|gb|BJ603975.1|BJ603975
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|162242772|gb|FC416411.1|FC416411
EST:     CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAG                         GGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 31 (downstream exon)
Score: 39

GGCCAAGTCTATGAAGTTCAAGGACGGCTACATGATTTCATCCGGAAGCCCTGTCAATGATTACATCGACAGTGCTGTTAGGCACGTCATGTTGCGTCAGgtatgttaca ... tgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAAGGACCTATGACTCCACTTCCAGATGTGGTCACCATCCATATGC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatgctttcagtttgccgttgtgaaactgaatcgaagatattgctgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAAGGACCTATGACTCCACTTCCAGATGTGGTCACCATCCATATGC
                                            ctgtcttct  CT-rich tract
                                   aagatatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgttacatatccttggccatttctctgttaactgagtttttctggctcttcccttatacttcttgtatcaaattgagttatctcagcatttcggtaatgctttcagtttgccgttgtgaaactgaatcgaagatattgctgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAAGGACCTATGACTCCACTTCCAGATGTGGTCACCATCCATATGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG