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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aggatatgtggtgtgtcgcagcgtaggagatgaggaagcgtgatggtgggatgttgtctgtgggttgtggtgctgagaggtgcggacgttgtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGTCGATCTCTCTGCCCCTGTGGTTGTCCCTGACACCTATCGTGCTCG

Basic information

species Physcomitrella patens
transcript PP1S450_17V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162277952|gb|FC454083.1|FC454083
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
EST: gi|100396781|gb|BY953824.1|BY953824
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAAG                         CTTTGGAGCCGTTCTTCAGCGCCGCG
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCG
EST: gi|162169285|gb|FC345447.1|FC345447
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
EST: gi|162173323|gb|FC349494.1|FC349494
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
EST: gi|100400356|gb|BY954436.1|BY954436
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTTGGGAGCCGT-CTTCAGCGCCGCGGCATCGCAGTTTCGT-CTGGGACA
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGG-AGCCGTTCTTCAGCGCCGCGGCATCGCAGTT-CGTTCTGGGACA
EST: gi|162229169|gb|FC404528.1|FC404528
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTTG-AGCCGTTCTTCAGCG
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCG
EST: gi|100367003|gb|BY948319.1|BY948319
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
EST: gi|162191919|gb|FC366924.1|FC366924
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
EST: gi|100390320|gb|BY952728.1|BY952728
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTTGGAGCCGTTCTTCAGCGCCGCGGCATC
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATC
EST: gi|208399191|gb|DC916560.1|DC916560
EST:     GCTGCAG-TGCAGTGTCANTCACACACACGATCAAGG                         C-TTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
genomic: GCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
EST: gi|162274710|gb|FC450789.1|FC450789
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
EST: gi|162186329|gb|FC361637.1|FC361637
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTTGGAGCCGTTCTTCAGCGCCGCGGCAT
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCAT
EST: gi|100362777|gb|BY947523.1|BY947523
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTTCGT-CTGGGACAG
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTT-CGTTCTGGGACAG
EST: gi|162175159|gb|FC352007.1|FC352007
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
EST: gi|67725043|gb|BJ975302.1|BJ975302
EST:     CACACACACGATCAAGG                         C-TTGGAGCCGTTNTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
genomic: CACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
EST: gi|162267304|gb|FC442092.1|FC442092
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
EST: gi|162207917|gb|FC383623.1|FC383623
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
EST: gi|100398083|gb|BY954079.1|BY954079
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAAG                         CTTTTGGAAGC-GTTCTTCAAGCGC-GCGGCATCGCAGTTCGTTCTGGGAC
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTT-GGA-GCCGTTCTTCA-GCGCCGCGGCATCGCAGTTCGTTCTGGGAC
EST: gi|100356432|gb|BY946362.1|BY946362
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         G
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacag-
EST: gi|100356432|gb|BY946362.1|BY946362
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         G
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacag-
EST: gi|100404947|gb|BY991361.1|BY991361
EST:     AAANGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAGGG                         CTTTGGAGCCGGTCTTCAGCGGCGCGGCATCGCAATTCGTTCTGGGACAGT
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
EST: gi|208372981|gb|DC940612.1|DC940612
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTTGGAGCNGTTCTTCANCGCCGCGGCATCNCANTTCGTTCTGGNA-ANT
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
EST: gi|208394479|gb|DC928531.1|DC928531
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCANTCACACACACGATCAAGG                         CTTTGGAGCCGTTTTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
EST: gi|162169456|gb|FC345812.1|FC345812
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTC
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTC
EST: gi|100405022|gb|BY991400.1|BY991400
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCG
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCG
EST: gi|162169468|gb|FC345824.1|FC345824
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
EST: gi|67702824|gb|BJ963057.1|BJ963057
EST:     TTGCAGTGTCATTCACACACACGATCAAGG                         CTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
genomic: TTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
EST: gi|100407336|gb|BY991651.1|BY991651
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTTTGGAGCCGTTCTTCAGCG
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTT-GGAGCCGTTCTTCAGCG
EST: gi|67728314|gb|BJ978573.1|BJ978573
EST:     CTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTNGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
genomic: CTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
EST: gi|67727194|gb|BJ977453.1|BJ977453
EST:     AAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
genomic: -AACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
EST: gi|67728180|gb|BJ978439.1|BJ978439
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTTGGAGCCGTTCCTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
EST: gi|162274117|gb|FC450189.1|FC450189
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
EST: gi|162192484|gb|FC368620.1|FC368620
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
EST: gi|208383308|gb|DC928280.1|DC928280
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
EST: gi|162212382|gb|FC388110.1|FC388110
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
EST: gi|208354225|gb|DC957431.1|DC957431
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
EST: gi|162183319|gb|FC359234.1|FC359234
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
EST: gi|208372225|gb|DC948028.1|DC948028
EST:     CGCTGCAG-TGCAGTGTCATTCACACACACGATCAAGG                         C-TTGGAGCCGTT-TTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
genomic: CGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
EST: gi|100354769|gb|BY983556.1|BY983556
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
EST: gi|100415630|gb|BY992928.1|BY992928
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTTGGAACCGTTCTTCAGCGCCGCGGC
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGC
EST: gi|100359820|gb|BY947142.1|BY947142
EST:     AACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATNCA-GG                         CTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGAC
genomic: AACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGAT-CAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGAC
EST: gi|162174747|gb|FC352163.1|FC352163
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
EST: gi|208380118|gb|DC927397.1|DC927397
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
EST: gi|67724759|gb|BJ975018.1|BJ975018
EST:     CGCTGCAG-TGCAGTGTCATTCACACACACGATCAANG                         CTTTGGAGCCGTTNTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
genomic: CGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
EST: gi|100398065|gb|BY954070.1|BY954070
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAAGT-CGTTCTGGGACA-
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCA-GTTCGTTCTGGGACAG
EST: gi|100391144|gb|BY953154.1|BY953154
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGT
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGT
EST: gi|67727037|gb|BJ977296.1|BJ977296
EST:     AACGTGTCATTNCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
genomic: AACGTGTCATT-CGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
EST: gi|100359673|gb|BY947095.1|BY947095
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTTTGGAGC-GTTCTTCA
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTT-GGAGCCGTTCTTCA
EST: gi|100418206|gb|BY993385.1|BY993385
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGAACAG
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGA-CAG
EST: gi|67727712|gb|BJ977971.1|BJ977971
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
EST: gi|100396499|gb|BY990155.1|BY990155
EST:     GAACGTGTCATTCGCTGCAGGTGCAGTGTCATTCACACACACGATCAAGG                         CTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
EST: gi|162223786|gb|FC400040.1|FC400040
EST:     GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGG                         CTTTGGAGCCGTTCTTC
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTC
EST: gi|100355853|gb|BY946071.1|BY946071
EST:     GAACGTGTCATTCGCTGCAGGTGCAGTGTCATTCACACACACGATCAAGG                         CTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT
genomic: GAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 43

ATGATGTTGATTCCGGTGTCTATCTGTCATGCCCTGGGTCACGTGATGACGAACGTGTCATTCGCTGCAGTTGCAGTGTCATTCACACACACGATCAAGGgtaaggaagt ... gtgttgacagCTTTGGAGCCGTTCTTCAGCGCCGCGGCATCGCAGTTCGTTCTGGGACAGTCGATCTCTCTGCCCCTGTGGTTGTCCCTGACACCTATCGTGCTCG




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