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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttttccataactatcctgtgaaagtcttaaatctggatgatttctatttttgtactcattgggttagttaaaatcttttgttgtacgtacaaacttcagtgctctaatttaactttcaaagctgcttcgcattgtaatttcagGGATATCAAGGGAGCCAACATTCTTGTAGACACCAATGGAATGGTGAAACTTGCCGACTTCGGCATGGCTAAGCAC

Basic information

species Physcomitrella patens
transcript PP1S44_113V6.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S44_113V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: EFJ27940 (Selaginella moellendorffii), 3'ss of exon 3
gtatttttccataactatcctgtgaaagtcttaaatctggatgatttctatttttgtactcattgggttagttaaaatcttttgttgtacgtacaaacttcagtgctctaatttaactttcaaagctgcttcgcattgtaatttcagGGATATCAAGGGAGCCAACATTCTTGTAGACACCAATGGAATGGTGAAACTTGCCGACTTCGGCATGGCTAAGCAC
                                                                                     | | |      |  |||   |  | |  ||  ||  |    |  |   | ||  |||  |||||| ||||| |||||||||||||| || ||||| |||||||| ||||||||||| || || |||||||| || |||
------------------------------------------------------------------------------------gtatgccccttcaactcaccaccatcacgta-tttataggcatattaatcttttgaatgccagGGACATCAAAGGAGCCAACATTCTAGTCGACACTAATGGAATTGTGAAACTTGCTGATTTTGGCATGGCGAAACAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaaacttcagtgctctaatttaactttcaaagctgcttcgcattgtaatttcagGGATATCAAGGGAGCCAACATTCTTGTAGACACCAATGGAATGGTGAAACTTGCCGACTTCGGCATGGCTAAGCAC
                  atttaac  putative branch site (score: 3)
                taatttaactttcaaa  TA-rich tract