1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cacagtatatatatacacatatttatggactatcgttcaatcaattgctctattggaagccattcctcgtattactcactagcttgatatgtgacatcagGTGGAGTATTTCTTTTAGAAGTTGACCGAATTTTGCGACCTGGAGGCTTTTGGGTTCTTTCTGGTCCACCAATCAATTATCAGACATGGTGGAAGGGTTG
species | Physcomitrella patens |
transcript | PP1S43_170V6.4 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTTCGATATGGCTCACTGCTCCAGATGCTTGATACCCTGGACTGAGTTTG GTGGAGTATTTCTTTTAGAAGTTGACCGAATTTTGCGACCTGGAGGCTTTTEST: gi|162171558|gb|FC347499.1|FC347499
genomic: TTTCGATATGGCTCACTGCTCCAGATGCTTGATACCCTGGACTGAGTTTGgtaagctgca ... gtgacatcagGTGGAGTATTTCTTTTAGAAGTTGACCGAATTTTGCGACCTGGAGGCTTTT
EST: TTTCGATATGGCTCACTGCTCCAGATGCTTGATACCCTGGACTGAGTTTG GTGGAGTATTTCTTTTAGAAGTTGACCGAATTTTGCGACCCTGGAG-CTTTEST: gi|18328434|gb|BJ160439.1|BJ160439
genomic: TTTCGATATGGCTCACTGCTCCAGATGCTTGATACCCTGGACTGAGTTTGgtaagctgca ... gtgacatcagGTGGAGTATTTCTTTTAGAAGTTGACCGAATTTTGCGACC-TGGAGGCTTT
EST: TTTCGATATGGCTCACTGCTCCAGATGCTTGATACCCTGGACTGAGTTTG GTGGAGTATTTCTTTTAGAAGTTGACCGAATTTTGCGACCTGGAGGCTTTTEST: gi|162226907|gb|FC403095.1|FC403095
genomic: TTTCGATATGGCTCACTGCTCCAGATGCTTGATACCCTGGACTGAGTTTGgtaagctgca ... gtgacatcagGTGGAGTATTTCTTTTAGAAGTTGACCGAATTTTGCGACCTGGAGGCTTTT
EST: TTTCGATATGGCTCACTGCTCCAGATGCTTGATACCCTGGACTGAGTTTG GTGGAGTATTTCTTTTAGAAGTTGACCGAATTTTGCGACCTGGAGGCTTTTEST: gi|162169959|gb|FC345899.1|FC345899
genomic: TTTCGATATGGCTCACTGCTCCAGATGCTTGATACCCTGGACTGAGTTTGgtaagctgca ... gtgacatcagGTGGAGTATTTCTTTTAGAAGTTGACCGAATTTTGCGACCTGGAGGCTTTT
EST: TTTCGATATGGCTCACTGCTCCAGATGCTTGATACCCTGGACTGAGTTTG GTGGAGTATTTCTTTTAGAAGTTGACCGAATTTTGCGACCTGGAGGCTTTTEST: gi|100407198|gb|BY974050.1|BY974050
genomic: TTTCGATATGGCTCACTGCTCCAGATGCTTGATACCCTGGACTGAGTTTGgtaagctgca ... gtgacatcagGTGGAGTATTTCTTTTAGAAGTTGACCGAATTTTGCGACCTGGAGGCTTTT
EST: TTTCGATATGGCTCACTGCTCCAGATGCTTGATACCCTGGACTGAGTTTG GTGGAGTATTTCTTTTAGAAGTTGACCGAATTTTGCGACCTGGAGGCTTTT
genomic: TTTCGATATGGCTCACTGCTCCAGATGCTTGATACCCTGGACTGAGTTTGgtaagctgca ... gtgacatcagGTGGAGTATTTCTTTTAGAAGTTGACCGAATTTTGCGACCTGGAGGCTTTT
tgctctattggaagccattcctcgtattactcactagcttgatatgtgacatcagGTGGAGTATTTCTTTTAGAAGTTGACCGAATTTTGCGACCTGGAGGCTTTTGGGTTCTTTCTGGTCCACCAATCAATTATCAGACATGGTGGAAGGGTTG
tattact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacagtatatatatacacatatttatggactatcgttcaatcaattgctctattggaagccattcctcgtattactcactagcttgatatgtgacatcagGTGGAGTATTTCTTTTAGAAGTTGACCGAATTTTGCGACCTGGAGGCTTTTGGGTTCTTTCTGGTCCACCAATCAATTATCAGACATGGTGGAAGGGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG